Rna-Seg Atlas則是目前有提供RNA-seq expression profiles的資料庫,但是其只含有一個data sets,11個檢體。 相對地,這次台灣清華大學建置的Cancer RNA-Seq Nexus資料庫裡頭有54組人類的癌細胞RNA-Seq data sets,且為phenotyp -genotype分類好的。另一方面,提供良好的視覺好網頁操作,可以用來看coding-transcript/lncRNA...
肿瘤转录组数分析CRN:Cancer RNA-Seq Nexus 2017-12-28 16:46 −... nkwy2012 0 1415 RNA-seq表达数据之样本PCA分析 2019-11-26 19:24 −## Principal component analysis (PCA) 分析 主成分分析(PCA)帮助我们归纳总结和可视化数据集中的信息,这些数据包含由多个相互关联的变量描述的个体 / 观察主成分...
Cancer RNA-Seq Nexus: A database of phenotype-specific transcriptome profiling in cancer cellsdoi:10.1093/nar/gkv1282Jianrong LiChuan Hu SunWenyuan LiChun Chi Liu
http://syslab4.nchu.edu.tw/index.jsp
(d), and P300 (e) ChIP-qPCR of indicated cell lines using primer amplifying e1 of ANLN SE.nof independent experiments is indicated by scatter dots.fmRNA expression levels of ANLN, data from Cancer RNA-seq Nexus. TNBCn = 42 samples, Normal tissuen = 21 samples adjacent to TNBC...
[74]. The origin and dynamics of monocyte-derived macrophages and self-maintained tissue-resident macrophages were further investigated in a mouse model of lung adenocarcinoma via a rigorous genetic approach combined with single-cell RNA sequencing (scRNA-seq) and lineage tracing. This study shows ...
[74]. The origin and dynamics of monocyte-derived macrophages and self-maintained tissue-resident macrophages were further investigated in a mouse model of lung adenocarcinoma via a rigorous genetic approach combined with single-cell RNA sequencing (scRNA-seq) and lineage tracing. This study shows ...
RNA-seq This paper GEO: GSE191100 Experimental models: Cell lines Cal27 ATCC Cat# ATCC-CRL-2095; RRID: CVCL_1107 B16F10 ATCC Cat# ATCC-CRL-6475; RRID: CVCL_0159 SCC9 ATCC Cat# ATCC-CRL-1629; RRID: CVCL_1685 HN4 University of Maryland Dental School N/A HN6 University of Maryland De...
RNA-seq, KEGG analysis and gene set enrichment analysis RNA-seq and data analysis were performed by RiboBio. Total RNA was extracted from cells, and mRNA was subsequently isolated using a poly(A) selection method. Differential expression analysis was conducted using DESeq2 with a significance leve...
Intrigued by the nexus between cytokine signalling and transcriptional control, we postulate that the IL-11 autocrine loop is a determinant of docetaxel resistance in prostate cancer via the JAK1/STAT4 signalling axis. This investigation delineates the molecular choreography of this resistance mechanism...