Rna-Seg Atlas則是目前有提供RNA-seq expression profiles的資料庫,但是其只含有一個data sets,11個檢體。 相對地,這次台灣清華大學建置的Cancer RNA-Seq Nexus資料庫裡頭有54組人類的癌細胞RNA-Seq data sets,且為phenotyp -genotype分類好的。另一方面,提供良好的視覺好網頁操作,可以用來看coding-transcript/lncRNA...
Cancer RNA-Seq Nexus: A database of phenotype-specific transcriptome profiling in cancer cellsdoi:10.1093/nar/gkv1282Jianrong LiChuan Hu SunWenyuan LiChun Chi Liu
肿瘤转录组数分析CRN:Cancer RNA-Seq Nexus 2017-12-28 16:46 −... nkwy2012 0 1415 RNA-seq表达数据之样本PCA分析 2019-11-26 19:24 −## Principal component analysis (PCA) 分析 主成分分析(PCA)帮助我们归纳总结和可视化数据集中的信息,这些数据包含由多个相互关联的变量描述的个体 / 观察主成分...
http://syslab4.nchu.edu.tw/index.jsp
Intrigued by the nexus between cytokine signalling and transcriptional control, we postulate that the IL-11 autocrine loop is a determinant of docetaxel resistance in prostate cancer via the JAK1/STAT4 signalling axis. This investigation delineates the molecular choreography of this resistance mechanism...
et al. A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors. Nat. Med. 26, 792–802 (2020). Article CAS PubMed PubMed Central Google Scholar Chen, Y. et al. Type I collagen deletion in αSMA+ myofibroblasts augments immune suppression and accelerates ...
Website:http://seqanswers.com/forums/showthread.php?t=43 Note: Examples Name:Cufflinks Comment:Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a ...
Over the past few decades, cancer immunotherapy has experienced a significant revolution due to the advancements in immune checkpoint inhibitors (ICIs) and adoptive cell therapies (ACTs), along with their regulatory approvals. In recent times, there has been hope in the effectiveness of cancer vacci...
Additionally, we have built a user-friendly and interactive online data portal, the SCRP (https://singlecell.mdanderson.org/), for visualizing scRNA-seq data. All scRNA-seq data used to build T cell reference maps in this study can be visualized via the SCRP and queried at https://...
Sci. Immunol.7, eabk1692 (2022).A RNA-IMC study of metastatic melanoma that identifies local patches of chemokine-secreting cells together with the phenotypes of the cells in the surrounding milieus. ArticleCAS Lin, J. R. et al. Multiplexed 3D atlas of state transitions and immune interaction...