We construct its complement web-based platform, the Single Cell Atlas (SCA,www.singlecellatlas.org), to enable vast interactive data exploration of deep multi-omics signatures across human fetal and adult tissues. The atlas resources and database queries aspire to serve as a one-stop, ...
Single Cell Expression Atlas: https://www.ebi.ac.uk/gxa/sc/home SignatureDB: https://lymphochip.nih.gov/signaturedb/ KIT(肾脏单细胞数据库): http://humphreyslab.com/SingleCell/ 血管细胞数据库: http://betsholtzlab.org/VascularSingleCells/database.html 脑细胞数据库: https://web.stanford.e...
流程: 1. log : NormalizeData 2. 找特征 : FindVariableFeatures 3. 标准化 : ScaleData 4. pca : RunPCA 5. 构建图 : FindNeighbors 6. 聚类 : FindClusters 7. tsne /umap : RunTSNE RunUMAP 8. 差异基因 : FindAllMarkers / FindMarkers VlnPlot(raw_sce, features = c("percent.rp", "percen...
Cell Information: Cell Type Fixed Aspect Ratio Colour (Continuous Data): White-Red Blue-Yellow-Red Yellow-Green-Purple Point Size: 03100.511.522.53 Reference: Grubman A., Chew G., Ouyang J.F. et al. A single-cell atlas of entorhinal cortex from individuals with Alzheimer’s disease ...
et al. Comprehensive integration of single-cell data. Cell 177, 1888–1902.e21 (2019). Article CAS PubMed Central PubMed Google Scholar Khan, A. et al. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 46,...
Despite the emergence of experimental methods for simultaneous measurement of multiple omics modalities in single cells, most single-cell datasets include only one modality. A major obstacle in integrating omics data from multiple modalities is that diff
GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools - showteeth/GEfetch2R
Aging is a global challenge, marked in the lungs by function decline and structural disorders, which affects the health of the elderly population. To explore anti-aging strategies, we develop a dynamic atlas covering 45 cell types in human lungs, spannin
R toolkit for single cell genomics www.satijalab.org/seurat Topics cransingle-cell-genomicssingle-cell-rna-seqhuman-cell-atlas Resources Readme License Unknown, MIT licenses found Code of conduct Code of conduct Activity Custom properties Stars ...
The data of this study have been uploaded to the Aging Atlas (https://bigd.big.ac.cn/aging/landscape?project=Human_Skin). Results Single-Cell Transcriptome Profiling Identified Different Skin Cell Types and Their Distribution Changes with Age We obtained human upper eyelid skin from healthy ...