3.merge 将2个或2个以上的已经sort了的bam文件融合成一个bam文件。融合后的文件不需要则是已经sort过了的。 Usage: samtools merge [-nr] [-h inh.sam] <out.bam> <in1.bam> <in2.bam>[...] Options: -n sort by read names -r attach RG tag (inferred from file names) ...
使用序列fasta文件作为header的输入 -o FILE output file name [stdout] -R FILE list of read groups to be outputted [null] -f INT required flag, 0 for unset [0] -F INT filtering flag, 0 for unset [0] Skip alignments with bits present in INT [0] ...
将2个或2个以上的已经sort了的bam文件融合成一个bam文件。融合后的文件已经sort过了的。 Usage: samtools merge [-nr] [-h inh.sam] <out.bam> <in1.bam> <in2.bam>[...] Options: -n sort by read names -r attach RG tag (inferred from file names) ...
-- File operations collate shuffle and group alignments by name cat concatenate BAMs merge merge sorted alignments mpileup multi-way pileup sort sort alignment file split splits a file by read group quickcheck quickly check if SAM/BAM/CRAM file appears intact ...
-o FILE output file name [stdout] -R FILE list of read groups to be outputted [null] -f INT required flag, 0 for unset [0] -F INT filtering flag, 0 for unset [0] Skip alignments with bits present in INT [0] 数字4代表该序列没有比对到参考序列上 ...
sort sort alignment file split splits a file by read group quickcheck quickly check if SAM/BAM/CRAM file appears intact fastq converts a BAM to a FASTQ fasta converts a BAM to a FASTA collate $samtools collate Usage: samtools collate [-Ou] [-o <name>] [-n nFiles] [-l cLevel] <...
longer help ./samtools sort usage: samtools sort options options: -n sort by read name -f use as full file name instead of prefix -o final 7、 output to stdout -l int compression level, from 0 to 9 -1 - int number of sorting and compression threads 1 -m int max memory per ...
将2个或2个以上的已经sort了的bam文件融合成一个bam文件。融合后的文件不需要则是已经sort过了的。 Usage: samtools merge [-nr] [-h inh.sam] <out.bam> <in1.bam> <in2.bam>[...] Options: -n sort by read names -r attach RG tag (inferred from file names) ...
-o FILE output file name [stdout] -R FILE list of read groups to be outputted [null] -f INT required flag, 0 for unset [0] -F INT filtering flag, 0 for unset [0] Skip alignments with bits present in INT [0] 数字4代表该序列没有比对到参考序列上 ...
将2个或2个以上的已经sort了的bam文件融合成一个bam文件。融合后的文件不需要则是已经sort过了的。 Usage: samtools merge [-nr] [-h inh.sam] <out.bam> <in1.bam> <in2.bam>[...]Options: -n sort by read names-r attach RG tag (inferred from file names)-u uncompressed BAM output-f ov...