NatalieQ: a web server for protein-protein interaction network querying. BMC Syst Biol. 2014;8:40.El-Kebir,M. et al. (2014) NatalieQ: a web server for protein-protein inter- action network querying. BMC Syst. Biol., 8, 40.Elkebir M, Brandt BW, Heringa J, et al. Natalieq: A ...
Protein-protein interaction is important in molecular and cellular biology for catalysis, regulation, immune response, and inhibition. Therefore, it is of interest to decipher PPI for the understanding of molecular biology events. Experimental methods such as yeast two-hybrid and biophysical (X-ray, ...
However, there is no webserver of LPIs relationship extraction from literature. Results:LPInsider is developed as the first webserver for extracting LPIs from biomedical literature texts based on multiple text features (semantic word vectors, syntactic structure vectors, distance vectors, and part of ...
PPIMpred is a web server that allows high-throughput screening of small molecules for targeting specific protein–protein interactions, namely Mdm2/P53, Bcl2/Bak and c-Myc/Max. Three different kernels of support vector machine (SVM), namely, linear, polynomial and radial basis function (RBF), ...
Protein–protein interaction networks are the networks of protein complexes formed by biochemical events and/or electrostatic forces and that serve a distinct biological function as a complex. The protein interactome describes the full repertoire of a biological system’s protein–protein interactions (PPI...
Figure 7.6 shows the prediction of protein–protein interaction sites from amino acid sequence using the server, Firestar. It takes the amino acid sequence in FASTA format and displays the output with confidence levels. The prediction report obtained with cons-PPISP using protein three-dimensional ...
In protein docking we aim to find the structure of the complex formed when two proteins interact. Protein–protein interactions are crucial for cell function. Here we discuss the usage of DOCK/PIERR. In DOCK/PIERR, a uniformly discrete sampling of orient
The number and type of the exposed and buried residues in both MRJP2 and its isoform X1 were predicted using the DeepREx-WS webserver (https://deeprex.biocomp.unibo.it) [37]. The sequence of each protein in the Fast Adaptive Shrinkage Thresholding Algorithm (FASTA) form was required for ...
PPIO hierarchy and term details are displayed using a web server. The browser is customized to search ontology by term name (A1) and display the ontology hierarchy (A2) and term details (A3). (B)“Mouse” related PPI information database (dbPPII). A global view for navigating the whole ...
As an additional test set, we used a set of six heterodimers from the CASP14 experiment. In addition, we extracted eight novel protein complexes deposited in PDB after 15 June 2021, which produced no results for at least one chain in each complex when submitted to the HHPRED web server (...