iLoops: A protein-protein interaction prediction server based on structural features. Bioinformatics, 2013, 29: 2360-2362Planas-Iglesias,J. et al. (2013) iLoops: a protein-protein interaction prediction server based on structural features. Bioinforma. Oxf. Engl., 29, 2360-2362....
Figure 7.6 shows the prediction of protein–protein interaction sites from amino acid sequence using the server, Firestar. It takes the amino acid sequence in FASTA format and displays the output with confidence levels. The prediction report obtained with cons-PPISP using protein three-dimensional ...
NatalieQ: a web server for protein-protein interaction network querying. BMC Syst Biol. 2014;8:40.El-Kebir,M. et al. (2014) NatalieQ: a web server for protein-protein inter- action network querying. BMC Syst. Biol., 8, 40.Elkebir M, Brandt BW, Heringa J, et al. Natalieq: A ...
interaction, domain-based yeast two-hybrid mapping [1], or footprinting [2], among others. The interface between two proteins is the result of the specific interaction between residue pairs playing a structural and functional role for the interaction. The properties ...
Structural insight of the protein–protein interaction (PPI) interface can provide knowledge about the kinetics, thermodynamics and molecular functions of the complex while elucidating its role in diseases and further enabling it as a potential therapeut
Protein–protein interaction networks allow us to understand pathogenic pathways that contribute to the disease, infection, and development and to translate this knowledge to effective diagnostics and therapeutic strategies. The conventional approach to drug intervention and treatment interventions started to ...
34 Web Server 10.1186/1471-2105-7-S5-S19 Article PubMed Central CAS PubMed Google Scholar Mathivanan S, Periaswamy B, Gandhi TK, Kandasamy K, Suresh S, Mohmood R, Ramachandra YL, Pandey A: An evaluation of human protein-protein interaction data in the public domain. BMC Bioinformatics...
Supplemental Data Resource A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome The PROTORP server analyses protein-protein associations in 3D structures. The server calculates a series of physical and chemical parameters of the protei... U Stelzl,U Worm,M Lalowski,...
As an additional test set, we used a set of six heterodimers from the CASP14 experiment. In addition, we extracted eight novel protein complexes deposited in PDB after 15 June 2021, which produced no results for at least one chain in each complex when submitted to the HHPRED web server (...
Protein-protein interaction is important in molecular and cellular biology for catalysis, regulation, immune response, and inhibition. Therefore, it is of interest to decipher PPI for the understanding of molecular biology events. Experimental methods su