Analysis of predicted interaction networks in context of expression correlation in various conditions reveals the dynamic changes associated with a number of biological processes. Full-size image (31K) View Within Article Figure 1 The performance of machine learning methods on gold standard data using ...
Ontological gene information and the protein–protein interaction network have been used for gene classification and protein synthesis in DNA methylation work, respectively. To overcome the above drawbacks, we propose protein–protein interaction-based gene correlation filtration (PPIGCF), which aims to ...
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Retinitis Pigmentosa; retinal degeneration; protein interaction network (PIN); protein–protein interaction (PPI); complex networks; network medicine; bioinformatics; STRING 1. Introduction Retinitis Pigmentosa (RP) is one of the monogenic human retinal dystrophies [1]. It is an inherited retinal ...
Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction. arXiv 2021, arXiv:2105.06709. [Google Scholar] Paradesi, M.S.; Caragea, D.; Hsu, W.H. Structural prediction of protein-protein interactions in saccharomyces cerevisiae. In Proceedings of the ...
Bromodomain Adjacent to Zinc Finger Domain 2B; BRD4-1, Bromodomain-containing protein 4; CREBBP, CREB-binding protein; HIV IN, HIV Integrase; XIAP, Inhibitor of apoptosis protein 3; EphA4, Ephrin type-A receptor 4; PCA, principal component analysis; PLIF, protein–ligand interaction fingerprint ...
LAST_RESULT_ENTRY_KEYUsed to track user’s interaction with embedded content. Maximum Storage Duration: SessionType: HTTP Cookie LogsDatabaseV2:V#||LogsRequestsStoreUsed to track user’s interaction with embedded content. Maximum Storage Duration: PersistentType: IndexedDB nextIdUsed to track user’...
The inputs of AtomNet used vectorized 3D grids placed over the protein–ligand interaction interface, with each grid cell storing a value describing the presence of some basic structural features, varying from a simple enumeration of atom types to more complex descriptors. Its network topology was ...
Amino acid network and its scoring application in protein-protein docking. Biophys. Chem. 2008, 134, 111–118. [Google Scholar] [CrossRef] Khashan, R.; Zheng, W.; Tropsha, A. Scoring protein interaction decoys using exposed residues (SPIDER): A novel multibody interaction scoring function ...
(CqMV1), in someChenopodium quinoaaccessions. In this study, we analyzed the mitochondrial proteome from leaves of quinoa, infected and not infected by CqMV1. Furthermore, by protein–protein interaction and co-expression network models, we provided a system perspective of how CqMV1 affects ...