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git安装 git clone https://github.com/chhylp123/hifiasm cd hifisam && make conda安装 conda install -c bioconda hifiasm 1.2. Hifiasm的基础命令 命令 nohup hifiasm -o sample_prefix -t 32 --h1 sample_HiC_1.fq.gz --h2 sample_HiC_2.fq.gz Hifi.fastq.gz 2>&1 > hifiasm.log & 参数 -o...
https://hifiasm.readthedocs.io/en/latest/index.html https://github.com/chhylp123/hifiasm
Github链接:https://github.com/chhylp123/hifiasm; 下载后make编译; 下载测试数据: wgethttps://github.com/chhylp123/hifiasm/releases/download/v0.7/chr11-2M.fa.gz 2.运行程序; hifiasm使用时根据已有的数据分为三种模式: 2.1.只有HiFi数据(基本)模式; 2.2.有Hi-C数据的Hi-C模式;2.3.有双亲二代测序的...
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git clone https://github.com/chhylp123/hifiasm cd hifisam && make conda(推荐) conda install -c bioconda hifiasm Usages Notes no need polish 无需合并多个输入文件 绝大多数二倍体基因组,只需要组装2n中的n,所以参数一般给 -l 2 -n 4 HiFi only 无需额外的数据类型组装 HiFi reads hifiasm -o...
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads - GitHub - atongsa/hifiasm: Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
wget https://github.com/chhylp123/hifiasm/releases/download/v0.7/chr11-2M.fa.gz 2.运行程序; hifiasm使用时根据已有的数据分为三种模式:2.1.只有HiFi数据(基本)模式;2.2.有Hi-C数据的Hi-C模式;2.3.有双亲二代测序的Trio-binning模式。 2.1# Run on test data,基本模式, ...
wget https://github.com/chhylp123/hifiasm/releases/download/v0.7/chr11-2M.fa.gz 2.运行程序; hifiasm使用时根据已有的数据分为三种模式: 2.1.只有HiFi数据(基本)模式; 2.2.有Hi-C数据的Hi-C模式;2.3.有双亲二代测序的Trio-binning模式。 2.1# Run on test data,基本模式, ...
介绍:Hifiasm能够在较短时间内完成大规模基因组的组装,可以用于PacBio的HiFi reads数据,也可以结合HiFi、超长和Hi-C数据进行T2T组装。适用于处理具有长读长和高准确性的HiFi reads数据,以及需要高质量单倍型解析的基因组组装项目。 1.下载安装 cd ~/software/hifiasm git clone https://github.com/chhylp123/hifiasm...