--adapter_fasta specify a FASTA file to trim both read1 and read2 (if PE) by all the sequences in this FASTA file (string [=]) --detect_adapter_for_pe by default, the adapter sequence auto-detection is enabled for SE data only, turn on this option to enable it for PE data. # ...
--adapter_sequence_r2 the adapter for read2 (PE data only). This is used if R1/R2 are found not overlapped. If not specified, it will be the same as(string [=auto]) --adapter_fasta specify a FASTA file to trim both read1 and read2 (if PE) by all the sequences in this FASTA...
--adapter_fasta specify a FASTA file to trim both read1 and read2 (ifPE) by all the sequencesinthis FASTA file (string [=]) --detect_adapter_for_pe by default, the adapter sequence auto-detection is enabledforSE data only, turn on this option toenableitforPE data.# global trimming ...
### 安装libdeflate ### git clone https://github.com/ebiggers/libdeflate.git cd libdeflate cmake -B build cmake --build build cmake --install build ### 安装fastp ### # 抓取源码: git clone https://github.com/OpenGene/fastp.git # 编译: cd fastp make # 安装: sudo make install 四...
--adapter_fasta specify a FASTA file to trim both read1 and read2 (if PE) by all the sequences in this FASTA file (string [=]) --detect_adapter_for_pe by default, the auto-detection for adapter is for SE data input only, turn on this option to enable it for PE data. ...
fastp是一个基于C++用于处理fastq文件的一体化工具。其特点有: 1、功能多样:能够处理多种多样的过滤前/后fastq数据,能够检测质量曲线、碱基含量、Q20/Q30、GC含量、重复序列、接头等信息。 2、过滤掉不好的序列(低质量、短序列、N含量过高的序列等)
fastp contains some built-in known adapter sequences for better auto-detection. If you want to make some adapters to be a part of the built-in adapters, please file an issue.You can also specify --adapter_fasta to give a FASTA file to tell fastp to trim multiple adapters in this FASTA...
trim all reads in front and tail cut adapters. Adapter sequences can be automatically detected, which means you don't have to input the adapter sequences to trim them. correct mismatched base pairs in overlapped regions of paired end reads, if one base is with high quality while the other...
If not specified, it will be the same as <adapter_sequence> (string [=]) --adapter_fasta specify a FASTA file to trim both read1 and read2 (if PE) by all the sequences in this FASTA file (string [=]) --detect_adapter_for_pe by default, the adapter sequence auto-detection is ...
trim all reads in front and tail cut adapters. Adapter sequences can be automatically detected, which means you don't have to input the adapter sequences to trim them. correct mismatched base pairs in overlapped regions of paired end reads, if one base is with high quality while the other...