Yes, I have Beagle phased vcf after GATK genotyping and bcfools filtering. Do you mean that, for example, convert one diploid to two haploids and rename theire SAMPLE IDs or just one haploid? I have found one solution that randomly chooses one allele using 'rtg vcffilter' with a java s...
Having to rename by hand is ugly.## (We might end up doing this anyway to support other compilers.)## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like ## -MM, not -M (despite what the docs say). Also, it might not be ## supported by the other compilers which ...
vcftools --vcf rename_rs_samples_filtered.vcf --remove skip_samples.tsv --recode --out new.vcf skip_samples.tsv为一行一个样本 4.提取某个区间的信息 vcftools --gzvcf /bioinfo/data/1000G/rawData/20130502/20130502.v5a/ALL.chrMT.phase3_callmom.20130502.genotypes.vcf.gz --indv NA18603 --...
renameutils resid rlog rngstreams rpc2 rremove rsstail rtpproxy rudecgi rudeconfig rudedatabase rudesession rudesocket rvm s2tc safestr scalc scrub scslib sdl_tbmf seccure see sha2 sharedance shishi shtool sighttpd sipcalc sitecing sitecopy skstream skyutils sl sloccount smartcardpp snappy ...