一般,孟德尔随机会用UKB的数据作为训练集,用芬兰的数据库作为验证集,如果想直接在R语言里面用在线的数据库的话,可以直接用IEU数据库( IEU OpenGWAS project)找到相应的数据集名称即可。下面讲一下如何下载具…
p_value The p-value of the variant/trait association chromosome The chromosome that the variant is located on base_pair_location The base pair location of the variant effect_allele The effect allele of the variant other_allele The non-effect allele ...
然后在网页里输入 https://storage.googleapis.com/finngen-public-data-r9/summary_stats/finngen_R9_O15_PRE_OR_ECLAMPSIA.gz就可以直接下载了 如果换别的数据库的话,直接把O15_PRE_OR_ECLAMPSIA换成其他的就行 UKB的数据库可以从GAWS里面下载 (https://www.ebi.ac.uk/gwas/downloads/summary-statistics) ...
(HS.model,data=sem_table,ordered=c('disease_1','disease_2','disease_3','disease_6')) fit_warmsummary<-summary(fit_warm,standardized=T) fitmeasures(fit_warm,fit.measures='all',baseline.model = NULL) modindices(fit_warm, sort = TRUE) ###Diligence HS.model1<-" DiligenceL=~1*persona...