git clone https://github.com/BGI-Qingdao/TGS-GapCloser.git YOUR-INSTALL-DIR Compile configure minimap2 If you have already installed a minimap2, then link it here rm -rf YOUR-INSTALL-DIR/minimap2 ln -s MINIMAP2-PATH YOUR-INSTALL-DIR/ ...
五、总结优化 #输出结果与Github显示结果文件类型不一致,查看几个输出结果也没有找到gap fill后的fasta。因此,建议该换使用git clone下载及配置。 #克隆安装包 gitclonehttps://github.com/BGI-Qingdao/TGS-GapCloser.git YOUR-INSTALL-DIR #minimap2的配置参照官网 #建议移除包带的minimap2,为已有的minimap2创建软...
TGS-gapcloser 是华大基因开发的,一个利用其他组装或是长度长测序数据对草图进行gap填充的一款软件。 基因组组装过程中会得到草图的scaffold,需要进一步进行gaps的关闭。TGS-gapcloser 是华大基因开发的,一个利用其他组装或是长度长测序数据对草图进行gap填充的一款软件。 1. 安装 下载 git clone https://github.com/B...
TGS-GapCloser is available on GitHub: https://github.com/BGI-Qingdao/TGSGapFiller. Authors: Mengyang Xu, Lidong Guo, Shengqiang Gu, Ou Wang, Rui Zhang, Guangyi Fan, Xun Xu, Li Deng, Xin Liu BioRxiv - Full text Share Published on: 2019年11月5日 ...
Hello author, I am using TGS_GapCloser on my 1.7G Pacbio genome assembly but there is some unexpected error that happened before the pilon step, according to my experience there is a problem in a sorted file, which can not proceed for fu...
The final assemblies generated by TGS-GapCloser have improved contiguity and completeness while maintaining high accuracy. The software is available at https://github.com/BGI-Qingdao/TGS-GapCloser. 展开 关键词: gap closure third-generation sequencing genome assembly ginkgo MHC ...