git clone https://github.com/BGI-Qingdao/TGS-GapCloser.git YOUR-INSTALL-DIR Compile configure minimap2 If you have already installed a minimap2, then link it here rm -rf YOUR-INSTALL-DIR/minimap2 ln -s MINIMAP2-PATH YOUR-INSTALL-DIR/ ...
#输出结果与Github显示结果文件类型不一致,查看几个输出结果也没有找到gap fill后的fasta。因此,建议该换使用git clone下载及配置。 #克隆安装包 gitclonehttps://github.com/BGI-Qingdao/TGS-GapCloser.git YOUR-INSTALL-DIR #minimap2的配置参照官网 #建议移除包带的minimap2,为已有的minimap2创建软链接rm-rf /h...
TGS-gapcloser 是华大基因开发的,一个利用其他组装或是长度长测序数据对草图进行gap填充的一款软件。 基因组组装过程中会得到草图的scaffold,需要进一步进行gaps的关闭。TGS-gapcloser 是华大基因开发的,一个利用其他组装或是长度长测序数据对草图进行gap填充的一款软件。 1. 安装 下载 git clone https://github.com/B...
The updated genome assemblies may promote the gene annotation, structural variant calling, and thus improve the downstream analysis of ontogeny, phylogeny, and evolution. TGS-GapCloser is available on GitHub: https://github.com/BGI-Qingdao/TGSGapFiller....
The final assemblies generated by TGS-GapCloser have improved contiguity and completeness while maintaining high accuracy. The software is available at https://github.com/BGI-Qingdao/TGS-GapCloser. 展开 关键词: gap closure third-generation sequencing genome assembly ginkgo MHC ...
The updated genome assemblies may promote the gene annotation, structural variant calling, and thus improve the downstream analysis of ontogeny, phylogeny, and evolution. TGS-GapCloser is available on GitHub: https://github.com/BGI-Qingdao/TGSGapFiller....