If you use TGS-GapCloser in your work, please cite: TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads Mengyang Xu, Lidong Guo, Shengqiang Gu, Ou Wang, Rui Zhang, Brock A Peters, Guangyi Fan, Xin Liu, Xun Xu, Li Deng, Yongwe...
Hello author, I am using TGS_GapCloser on my 1.7G Pacbio genome assembly but there is some unexpected error that happened before the pilon step, according to my experience there is a problem in a sorted file, which can not proceed for fu...
TGS_GapCloser: A gap-closing software tool that uses long reads to enhance genome assembly. LR_Gapcloser: Use long sequenced reads to close gaps in assemblies. However, some softwares cause conflicts because of version of Python/Perl. For convienience, we revise theses scripts and package them ...
tgsgapcloser tiara tool_recommendation_model trim_galore twistdna uniprot_rest_interface visualise_annotation vt whisper wtdbg visualisations workflows .gitignore .tt_biocontainer_skip .tt_skip CONTRIBUTING.md LICENSE README.md job_conf.xml_condor setup.cfgBreadcrumbs galaxytools /tools /rna_tools...
until I bumped my memory up to 200G, but now minimap2 is running slow at producing the fastq file from the sam file. Is there anyway to speed it up? For my project I am trying to align all my blank reads as the reference to my environmental samples, then saving an updated environmen...