databasesepitopesfood allergiesfoodshuman diseasesIgEThis chapter describes how the Structural Database of Allergenic Proteins (SDAP) can be used to identify allergens and define structurally related allergenic proteins from different food sources. It also contains a list of websites that contain ...
1.5.4Databases for structural classification of proteins Murzin et al. (1995)constructed the SCOP database, which provides a detailed and comprehensive description of the structural and evolutionary relationships of the proteins of known structures. For each protein, the classification...
The database of Protein Interactions by Structural Matching (PRISM,Ogmen et al. (2005)) is unique in the structural classification databases in that it does not employ structural domain definitions. Rather it is derived from a non-redundant dataset of interface structures. An interface ...
Protein Data Bank (PDB): Database of Three-Dimensional Structural Information of Biological Macromolecules The Protein Data Bank (PDB) at Brookhaven National Laboratory, is a database containing experimentally determined three-dimensional structures of proteins,... Joel,L.,Sussman,... - 《Acta Crysta...
The spectral fitting was conducted using databases of protein fragmented structures related to 13Cα, 13Cβ, and 13C′ chemical shifts and cross-peak intensities. The experimental 13C–13C inter- and intra-residue correlation spectra of uniformly isotope-labeled ubiquitin in the lyophilized state ...
Structural information on the interactions of proteins with other molecules is plentiful, and for some proteins and protein families, there may be 100s of available structures. It can be very difficult for a scientist who is not trained in structural bio
The database of structural motifs in proteins (DSMP) contains data relevant to helices, beta-turns, gamma-turns, beta-hairpins, psi-loops, beta-alpha-beta motifs, beta-sheets, beta-strands and disulphide bridges extracted from all proteins in the Protein Data Bank primarily using the PROMOTIF ...
The FW domain (also known as NBR1 domain), named after four conserved tryptophan residues, is a signature domain found in all Nbr1 proteins22,23,24. This domain has been annotated by protein domain databases (Pfam database ID PF16158, NCBI CDD database ID cd14947, and InterPro database ...
T-DB presents researchers with the opportunity for comprehensive studies of the variability in proteins and is publicly available at http://mozart.bio.neu.edu/topofit/index.php. 展开 关键词: Structural Homology, Protein Mathematical Computing Internet User-Computer Interface Databases, Protein ...
The database is intended to enhance communication among structural genomics researchers and aid dissemination of their results. The PRESAGE database may be accessed at http://presage.stanford.edu/关键词: amino acid sequences, databases, identification, genes, proteins ...