A protein sequence/structure database - AKRIGG, BLEASBY, et al. - 1988Akrigg D, Bleasby AJ, Dix NIM, Findlay JBC, North ACT, Parry-Smith D, Wootton JC, Blundell TL, Gardner SP, Hayes F, Islam S, Sternberg MJE, Thornton JM, Tickle IJ, Murray-Rust P (1988) A protein sequence/...
We are now entering a new era in protein sequence and structure annotation, with hundreds of millions of predicted protein structures made available through the AlphaFold database1. These models cover nearly all proteins that are known, including those challenging to annotate for function or putative...
Varadi, Met al. AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.Nucleic Acids Research(2024). If you use data from AlphaMissense in your work, please cite the following paper: ...
V. Trends in protein evolution inferred from sequence and structure analysis. Curr. Opin. Struct. Biol. 12, 392–399 (2002). Article CAS Google Scholar Galperin, M. Y., Walker, D. R. & Koonin, E. V. Analogous enzymes: independent inventions in enzyme evolution. Genome Res. 8, 779...
Multiple Sequence Alignment (MSA) plays a pivotal role in unveiling the evolutionary trajectories of protein families. The accuracy of protein structure pr... B Chen,Z Bei,X Cheng,... 被引量: 0发表: 2024年 Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFol...
Recently, progress has been made to set up a single worldwide database of protein sequence and function, UniProt, by unifying PIR, SWISS-PROT, and TrEMBL database activities. 1.4.1 Protein Information Resource PIR has evolved from the Atlas of Protein Sequence and Structure established in the...
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark. machine-learning big-data binder apache-spark jupyter protein-data-bank protein-structure jupyter-notebook pyspark scientific-computing protein-sequences protein-protein-interaction protein-...
Protein Data Bank(PDB): the PDB format provides a standard representation for macromolecular structure data derived from X-ray diffraction and NMR studies (www.rcsb.org). View article Review article Carbohydrates: A feast of structural glycobiology • Sequences and topology: Computational studies of...
The Conserved Domain Database (CDD) is a freely available resource for the annotation of sequences with the locations of conserved protein domain footprints, as well as functional sites and motifs inferred from these footprints. It includes protein domain and protein family models curated in house ...
PeptideThe molecular structure of a peptide (a small protein) consists of a sequence of amino acids. biochemistry Also known as: macromolecular peptide Written by Felix Haurowitz Distinguished Professor of Chemistry, Indiana University, Bloomington. Author ofChemistry and Function of Proteins. ...