conda create -n starFusionconda activatestarFusion conda install -c bioconda trim-galore conda install -c bioconda star-fusion 可以看到目前两个软件版本是: STAR --version 2.7.10a STAR-Fusion --version STAR-Fusion version: 1.6.0 perl --version This is perl 5, version 26, subversion 2 (v5.2...
install DB_File install URI::Escape install Set::IntervalTree install Carp::Assert install JSON::XS install PerlIO::gzip##这几个软件包都需要安装才可以进行下去 star-fusion的安装 tar xvf STAR-Fusion-v1.11.1.FULL.tar.gz cd STAR-Fusion-v1.11.1 star如何安装 Releases · alexdobin/STAR (github...
conda install-c bioconda trim-galore conda install-c bioconda star-fusion 可以看到目前两个软件版本是: 代码语言:javascript 代码运行次数:0 复制 Cloud Studio代码运行 STAR--version2.7.10aSTAR-Fusion--versionSTAR-Fusion version:1.6.0perl--version This is perl5,version26,subversion2(v5.26.2)builtforx...
conda install -c bioconda trim-galore conda install -c bioconda star-fusion 可以看到目前两个软件版本是: STAR --version 2.7.10a STAR-Fusion --version STAR-Fusion version: 1.6.0 perl --version This is perl 5, version 26, subversion 2 (v5.26.2) builtforx86_64-linux-thread-multi 然后运行...
1. conda install -c bioconda star-fusion 因为需要使用 star 这个比对工具对 fastq 比对成 bam,所以那部 分请自行学习,这里我们已经得到了 bam 文件啦。 数据库文件的下载 可 以 先 去 https://data.broadinstitute.org/Trinity/CTATRESOURCELIB/ 查看 对应的参考基因组版本: 1. mkdir -p ~/biosoft/star...
conda install -c bioconda fusion-inspector bin_star='~/biosoft/STAR-2.7.3a/bin/Linux_x86_64/STAR'lib='~/biosoft/starFusion/db/GRCh38_gencode_v31_CTAT_lib_Oct012019.plug-n-play/ctat_genome_lib_build_dir/'FusionInspector --fusions SRR2016940_fusionList.txt \ ...
STAR-Fusion是一款基于STAR比对结果进行融合基因鉴定的软件。 配置流程 1.配置编译环境 1)安装相关依赖。 yum install perl-ExtUtils-MakeMaker perl-Data-Dumper perl-DB_File perl-JSON-XS-y 2)安装STAR-2.7.0f。 请参见https://support.huaweicloud.com/prtg-kunpenghpcs/kunpenghpcs_prtg_0022.html安装。
conda install-c bioconda fusion-inspector bin_star='~/biosoft/STAR-2.7.3a/bin/Linux_x86_64/STAR'lib='~/biosoft/starFusion/db/GRCh38_gencode_v31_CTAT_lib_Oct012019.plug-n-play/ctat_genome_lib_build_dir/'FusionInspector--fusions SRR2016940_fusionList.txt \-OSRR2016940--genome_lib $lib...
Hi, I am using STAR-Fusion version 1.0.1. I am getting the following error: ModuleNotFoundError: No module named 'ConfigParser' Error, cmd: /home/rathik/tools/miniconda3/envs/rnaseq-env/lib/STAR-Fusion/FusionInspector/FusionInspector --fusions star-fusion.fusion_predictions.abridged.annotated...
I noticed a small issue when running the FusionInspector pipeline, where at the very end, it would fail with an error from create_fusion_report.py, line 7, that the igv_report module could not be found. I have already installed this modu...