最耗时的步骤已经是过去了,理论上这个时候star-fusion流程内部的一个perl脚本去解析star比对过程中输出的Chimeric.out.junction文件就可以完成融合基因的搜索啦。 但是STAR-Fusion流程就报错 我看了看这个运行日志,以及对应的报错信息: Running CMD: /home/data/fusion/miniconda3/envs/starFusion/lib/STAR-Fusion/util...
# trim,star 两个软件即可 conda create-n starFusion conda activate starFusion conda install-c bioconda trim-galore conda install-c bioconda star-fusion 可以看到目前两个软件版本是: 代码语言:javascript 代码运行次数:0 复制 Cloud Studio代码运行 STAR--version2.7.10aSTAR-Fusion--versionSTAR-Fusion versio...
conda install -c bioconda trim-galore conda install -c bioconda star-fusion 可以看到目前两个软件版本是: STAR --version 2.7.10a STAR-Fusion --version STAR-Fusion version: 1.6.0 perl --version This is perl 5, version 26, subversion 2 (v5.26.2) builtforx86_64-linux-thread-multi 然后运行...
用命令 conda install libgcc cp ~/miniconda3/lib/libstdc++.so.6 ~/miniconda3/envs/rna/lib/
BEGINfailed--compilation aborted at /home/jianmingzeng/biosoft/starFusion/STAR-Fusion/STAR-Fusion line 12.Can'tlocateSet/IntervalTree.pmin@INC(you may need to install theSet::IntervalTreemodule) (@INCcontains: /home/jianmingzeng/biosoft/starFusion/STAR-Fusion/PerlLib/home/jianmingzeng/miniconda2/...
yhw-yhw / D2HC-RMVSNet Public Notifications Fork 9 Star 109 Code Issues 5 Pull requests Actions Projects Security Insights Files master datasets doc lists models third_party LICENSE README.md conda_install.sh env.sh eval.py eval_dtu.sh eval_tanks.sh fusion.py fusion.sh train....
installed with opensslconda install openssl added openssl to PATH updated condaconda update conda updated everything elseconda update --all This issue seems multifaceted, and we're working to identify and remedy the potential causes. I'm closing this issue in favor of the more specific facets: ...
conda install -c bioconda trim-galore conda install -c bioconda star-fusion 可以看到目前两个软件版本是: STAR --version 2.7.10a STAR-Fusion --version STAR-Fusion version: 1.6.0 perl --version This is perl 5, version 26, subversion 2 (v5.26.2) builtforx86_64-linux-thread-multi ...
conda install -ypysamucsc-blatbedtoolsstarstar-fusiontophatcircexplorer2 bwa bowtie bowtie2samtools conda install -y bioconductor-tcgabiolinks bioconductor-clusterprofiler bioconductor-org.hs.eg.db -bash-4.1$ conda install -y ucsc-blat Solving environment: failed ...
作为Mamba最核心的功能,Mamba对conda install语句进行并行化改造,达到加速下载过程的目的。 以下载qgis为例,使用mamba install -c conda-forge qgis -y代替以前的安装方式,执行命令后,Mamba会在短暂获取资源下载链接之后,以并行的方式按计划同时下载多个资源,比老方法要快很多: ...