每行一个 ID； # `input.fasta` 是需要提取的 FASTA 格式文件； # `output.fasta` 是提取出的序列...
seq transform sequences (extract ID, filter by length, remove gaps, reverse complement...) sliding extract subsequences in sliding windows stats simple statistics of FASTA/Q files subseq get subsequences by region/gtf/bed, including flanking sequences translate translate DNA/RNA to protein sequence ...
seq transform sequences (extract ID, filter by length, remove gaps...) shuffle shuffle sequences sliding extract subsequences in sliding windows sort sort sequences by id/name/sequence/length split split sequences into files by id/seq region/size/parts (mainly for FASTA) split2 split sequences...
(start:end) rename rename duplicated IDs replace replace name/sequence by regular expression restart reset start position for circular genome rmdup remove duplicated sequences by id/name/sequence sample sample sequences by number or proportion seq transform sequences (revserse, complement, extract ID....
seq transform sequences (revserse, complement, extract ID...) subseq get subsequences by region/gtf/bed, including flanking sequences sliding sliding sequences, circular genome supported stat simple statistics of FASTA files faidx create FASTA index file...
Sequence and subsequence seqtransform sequences (revserse, complement, extract ID...) subseqget subsequences by region/gtf/bed, including flanking sequences slidingsliding sequences, circular genome supported statsimple statistics of FASTA files
sequences of multiple files by id/name/sequence concat concatenate sequences with sameIDfrommultiple files convert convertFASTQquality encoding between Sanger,SolexaandIlluminaduplicate duplicate sequencesNtimes faidx createFASTAindex file and extract subsequence fish lookforshortsequencesinlarger sequencesusing...
seq transform sequences (revserse, complement, extract ID...) subseq get subsequences by region/gtf/bed, including flanking sequences sliding sliding sequences, circular genome supported stat simple statistics of FASTA files faidx create FASTA index file Format conversion fx2tab covert FASTA/Q to ...
Sequence and subsequence seqtransform sequences (revserse, complement, extract ID...) subseqget subsequences by region/gtf/bed, including flanking sequences slidingsliding sequences, circular genome supported statsimple statistics of FASTA files
1. seqkit 软件根据序列id，从fa文件中提取序列 conda install -c bioconda seqkit seqkit grep -f ...