Q15. 如何RmsdByResidue插件? Q16. 如何找底物附近的氨基酸? Q17. 如何把两个object合并到一个pdb文件中? Q18. 如何快速查看感兴趣原子的坐标? Q19. pymol有没有命令返回在氨基酸编号,在小分子4A范围内氨基酸的编号? Q20. 请问一个nmr的pdb文件中有很多个构象,如何求他的平均结构呢? Q21 如何调节PyMOL右侧...
用pymol来做,pdb没有氢的需要加氢,选肽段,find-polar contacts-to others excluding solvent,all-show lines,手工选取形成氢键的残基,显示为sticks,关闭lines,标记by residue,记录残基号。在pml文件里输入残基号,用命令显示选择内的氢键。 The "polar contacts" mentioned above are probably better at finding hydro...
是的,这东西叫属性选择符,列表如下属性选择符缩略形式标识符和举例symbole.Chemical-symbol-list单字母或双字母的化学元素符号PyMOL>select polar,symbol o+nn amen.Atom-name-list蛋白和核酸中至多4字母的原子符号PyMOL>select carb ons,n ame ca+cb+cgresnr.Residue-name-list3字母的氨基酸符号PyMOL> 20、...
Re: [PyMOL] The 'select' command for complex residue selection Ali Kusay Re: [PyMOL] The 'select' command for complex residue selection sunyeping via PyMOL-users Re: [PyMOL] The 'select' command for complex residue selection Kevin Jude Re: [PyMOL] The 'select' command for complex...
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[PyMOL] Ribbon width per residue achatz Re: [PyMOL] Ribbon width per residue Ali Saad Kusay [PyMOL] Question: Align object from group (and move rest of group with it) Jacek Kozuch Re: [PyMOL] Question about visualisation of the spheres objects on PNG image Ali Saad Kusay ...
PyMOL简介及相关操作
colours used by PyMOL (in which case the 23rd object, if it exists,gets the same colour as the first), or are the colours of the rainbowGareth StockwellList the color of atomsTo retrieve the color for a residue as identified in an expression, you can either iterate over aselection from...
resi 10 另外,利用括号可以多重逻辑选择,如选择chain b,但不选择其中的residue 88: Pymol select chain b and (not resi 88) 注:当有多个括号时,Pymol优先处理最里层括号里面的内容。 35 ?关于cartoon ? cartoon的命令格式如下: ? Pymol cartoon type, (selection) ? cartoon的显示类型: ? Automatic:...
Pymol 使用说明 PyMol Tutorial http://ihome.cuhk.edu.hk/~b102142/pymol/pymol_tutorial.html[2014/6/12 11:19:32][return to KB Wong's home page]Through this tutorial, you will be able to generate the following figures:You can download the files for the tutorials here Files included:1w2...