involves special connectivity to other residues, update ``specbond.dat``. Note that if allyou are doing is simulating some weird ligand in water, or some weird ligand with a normal protein then the above is more work than generating a standalone :ref:`itp` file containing ``[...
The TCR integrates forces in its triggering process upon interaction with pMHC. Force elicits TCR catch-slip bonds with strong pMHCs but slip-only bonds with weak pMHCs. We develop two models and apply them to analyze 55 datasets, demonstrating the models’ ability to quantitatively integrate and...
(G) Structural comparisons among IF, OC, and OF states. The superimposition was performed with PyMOL (Schrödinger, 2015) and for the helices containing conserved glycine residues: TM2, TM4, TM5, TM7, TM8, TM10, and TM11. The helices are shown in tube representations and colored based...
The LIC binds to the HC bundles 6 and 7 (Figure 2B) using a series of conserved hydrophobic residues near its N terminus, in agreement with previous predictions (Schroeder et al., 2014) (Figure S2E). Download: Download high-res image (1MB) Download: Download full-size image Figure 2. ...