dss mov, 1 为了人工改变属性,最好的方式是使用alter命令: show cartoon alter 11−40/, ss='H' #指定residues 11−40 为helix alter 40−52/, ss='L' #指定residues 40−52为loop alter 52−65/, ss='S' #指定residues 52−65为sheet alter 65−72/, ss='H' #指定residues 65−72...
cmd.alter_state(1, '%m1', 's.label_placement_offset = [0., 1., 0.]') m2_setting = [] cmd.iterate_state(1, 'first %m2', 'm2_setting.append(s.label_placement_offset)', space=locals()) self.assertArrayEqual([1., 0., 0.], m2_setting[0], 0.001) 浏览完整代码 来源:PYMOL...
Residue-identifier-list 至多4位数的残基号 PyMOL>select boy,resi 1+10+100+1000 Residue-identifier-range PyMOL>select boy,resi 1-10 alt alt Alter 15、nate-conformation-identifier-list 单字母 PyMOL>select altconf,alt a+’‘ chain c. Chain-identifier-list 单字母或有时是数字 PyMOL>select 007...
最好的方式是使用alter命令:showcartoonalter11−40/,ss='H'#指定residues11−40为helixalter40−52/,ss='L'#指定residues40−52为loopalter52−65/,ss='S'#指定residues52−65为sheetalter65−72/,ss='H'#指定residues65−72为helixrebuild#重建cartoon光线追踪(raytracing)光线追踪能制作出最高...
PyMOL用户指南目录一、 鼠标操作入门 4(这个数字是超链接,ctrl+左键)1. 启动41) 通过鼠标42) 通过命令行42. PyMOL窗口41) Virewer窗口42) 外部GUI窗口53. 下载PDB文件54. 操控视图61) 基本鼠标控制62) 虚拟滚动球
如果你在看动画,可能会希望从动画的某一特定状态得到二级结构归属,可以这样做到:语法 dss selection, state 例如 dss mov, 1 为了人工改变属性,最好的方式是使用alter命令: show cartoon alter 11?40/, ss=H #指定residues 11?40 为helix alter 40?52/, ss=L #指定residues 40?52为loop alter 52?65/,...
using the slow "alter" command on both selections. I hope this helps. Cheers, Rob -- Robert L. Campbell, Ph.D. <r...@post.queensu.ca> Senior Research Associate phone: 613-533-6821 Dept. of Biochemistry, Queen's University, fax: 613-533-2497 ...
Additionally, the residue names can be changed for bonded cysteines:alter cys/,name=‘CYX’or for specific residuesalter 24+26+56+99/,name=‘CYX’Warren DeLanoAdding hydrogen bondsRegarding H-bonds. There isn’t a built-in function yet, but you can show H-bonds between twoobjects using ...
Opensource molecular visualization system. Fork of http://sourceforge.net/projects/pymol/ We provide pymol windows installer for python2.7, for both pymol 1.5 and pymol 1.6 - pymol/pymol/ChangeLog at master · evonove/pymol
将A链的表面显示出来 create obj_a, chain A show surface, obj_a 3.选择配体(甲酸盐离子)并将配体显示成球形 select ligand,resn FMT;color cyan, ligand; show sticks, ligand show spheres, ligand 4.改变球形直径大小,并将表面透明度设成0.25 alter ligand, vdw=0.5 rebuild set transparency=0.25 5....