本研究利用SLAF-seq的策略,构建了辣椒超高密度遗传图谱,该图谱拥有9328个SLAF标记,图距仅0.22cM。基于此图谱,作者定位到两个主效应QTL--Ffn2.1和Ffn2.2,结合辣椒已有基因注释信息,发现在定位区间内包含59个基因,经RNA-seq分析显示,仅有3个存在差异表达,最终确定了一个与首花节位相关的基因。本研究构建的辣椒遗传图...
RNA-Seq, Transcriptomics, Gene-expression, Visualisation, Database, Agriculture, Barley, Maize, Rice, Wheat, TomatoBackground: The genome-wide expression profile of genes in different tissues/cell types and developmental stages is a vital component of many functional genomic studies. Transcriptome data...
Background:Single cell RNA-Seq analysis utilises feature selection to classify and characterise cell clusters withing a heterogeneous cell population. To our knowledge there is no public pipeline to interrogate this plethora of data and identify by co-expression corelation the putative unknown or additi...
RNA Seq Analysis Reveals Metabolic and Natriuretic Pathways Regulated by Renal T Cell InfiltrationPreviously, we presented work using a servo-control system to maintain pressure to the left kidney at normotensive levels during high salt feeding. Using this approach we have demonstrated that T-cell ...
Fixation and Laser Capture Microdissection of Plant Tissue for RNA Extraction and RNASeq Library Preparation Streptozotocin‐Induced Diabetic Models in Mice and Rats BioID: A Screen for Protein‐Protein Interactions FACS‐Mediated Isolation of Neuronal Cell Populations From Virus‐Infected Human Embryonic ...
Output is a Anndata object for further analysis with scanpy. data_listcan be data_path, file format included txt, csv, h5ad, h5mu/rna, h5mu/atac, dir contains mtx list of data_paths Anndata list of AnnData above mixed batch_categoriesis optional, name of each batch, will be range from...
Abstract Oasis is a web application that allows for the fast and flexible online analysis of small-RNA-seq (sRNA-seq) data. It was designed for the end user in the lab, providing an easy-to-use web frontend including video tutorials, dem... C Vincenzo,Garcia Vizcaino Julio C.,V Ramon...
论文题目:Deeplearningenables accurateclusteringand batch effect removal in single-cell RNA-seq... Correlation Analysis3(CCA) or Mutual Nearest Neighbors (MNN) approach4.在ScRNA-seq中常用的消除批次效应的方法:CCA和MNN NIPS2018深度学习(8)|亮点:实证深度学习、贝叶斯、半监督众包聚类 ...
Oligonucleotide insecticides and RNA-based insecticides: 16 years of experience in contact using of the next generation pest control agents V. V. Oberemok K. V. Laikova N. V. Gal’chinsky Review Published: 11 June 2024 This is part of 1 collection ...
regulAS: A Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data The regulAS software package is a bioinformatics tool designed to support computational biology researchers in investigating regulatory mechanisms of splic... S Lipnitskaya 被引量: 0发表: 2023...