In Chapter 1, we provide an overview of the bioinformatics challenges associated with the analysis of data from large genotyping arrays. In Chapter 2, we use a machine learning algorithm combined with SNP filtering methods and traditional statistics to identify SNP-SNP interactions that are highly ...
A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 2011;43:491–498. 9. Cingolani P, Platts A, Wang le L, et al. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome...
34. Genome-wide mosaicism, chimerism, and contamination: Recognizing and interpreting genotyping patterns from SNP arraysdoi:10.1016/j.cancergen.2018.04.095Conlin Laura K.Luo MinjieWeckselblatt BrookeRafferty Kelly A.Kalish JenniferZackai Elaine H....