We performed GWAS on three traits (grain yield, plant height and male flowering time) measured in 22 environments on a panel of 247 F1 hybrids obtained by crossing 247 diverse dent maize inbred lines with a same flint line. The 247 lines were genotyped using three genotyping technologies (...
Blood Group Genotyping:from SNP Arrays to Whole Genomes 关于血型的分子检测,小编一直都有关注。 从基于SNP位点引物特异性设计的pcr+凝胶电泳的技术到荧光定量pcr,再到芯片检测、核酸质谱,再到基因组测序,都曾被广泛讨论。 今日,学习了一份相关课件,和大家做个分享。 往期关于血型分子检测内容链接: 血型分子分型...
Description : An R package for analysis of genotyping Illumina array array data. ArrayFusion Description : A tool to annotate CGH results and microarray data from a range of platforms, such as cDNA, expression, exon, SNP, array-CGH and ChIP-on-chip. It converts the data into standard forma...
SNP genotyping with arraysNucleotideSingle Nucleotide PolymorphismGlass SlideSequence VariantSingle SampleNo Abstract available for this article.doi:10.1186/gb-spotlight-20001019-01William WellsBioMed CentralGenome Biology
SNP genotyping arrays have been useful for many applications that require a large number of molecular markers such as high-density genetic mapping, genome-wide association studies (GWAS), and genomic selection. We report the establishment of a large maize SNP array and its use for diversity analys...
Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array. The analysis of single nucleotide polymorphisms (SNPs) is increasingly utilized to investigate the genetic causes of complex human diseases. Here we presen... Matsuzaki,H. - 《Genome Research...
SNP genotyping arrays:SNP阵列是一种DNA微阵列,用于检测群体内的多态性。单核苷酸多态性是DNA中单个位点的变异,是基因组中最常见的变异类型。在人类基因组中已经鉴定了大约3.35亿个SNP,其中1500万个在全世界不同人群中以1%或更高的频率存在。 单倍型(haplotype:若干个决定同一性状的紧密连锁的基因构成的基因型 ...
做SNP genotyping应该常看的几个database: 1. NCBI dbSNP 从这里出发可以连到下面几个网站。 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=snp 2. International Hap 做SNP genotyping应该常看的几个database: 1. NCBI dbSNP 从这里出发可以连到下面几个网站。
We developed a 384 multiplexed SNP array, named CitSGA-1, for the genotyping of Citrus cultivars, and evaluated the performance and reliability of the genotyping. SNPs were surveyed by direct sequence comparison of the sequence tagged site (STS) fragment amplified from genomic DNA of cultivars rep...
A subset of the SNPs on the array (539) was selected based on patterns of variation among the SNP discovery accessions. We show that more than 95% of the loci produce high quality genotypes and that the genotyping error rate for these is likely below 2%. We demonstrate that even among ...