13Branches46Tags Code Folders and files Name Last commit message Last commit date Latest commit pchaumeil Update classify_wf.ipynb Mar 5, 2025 0f1ae4e·Mar 5, 2025 History 964 Commits .github refactor(config): Refactored config to read variables dependent on GT… ...
https://ecogenomics.github.io/GTDBTk/ReferencesGTDB-Tk is described in:Chaumeil PA, et al. 2019. GTDB-Tk: A toolkit to classify genomes with the Genome Taxonomy Database. Bioinformatics, btz848.The Genome Taxonomy Database (GTDB) is described in:...
Github: https://github.com/Ecogenomics/GTDBTk GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。 本...
Source code and documentation are available at: https://github.com/ecogenomics/gtdbtk.Contact: p.chaumeil@uq.edu.au or donovan.parks@gmail.comSupplementary information: Supplementary data are available at Bioinformatics online.1 IntroductionIt has recently become possible to obtain thousands of draft ...
GTDB-Tk:https://github.com/ecogenomics/gtdbtk Bioconda:https://ecogenomics.github.io/GTDBTk/installing/bioconda.html 官网:https://gtdb.ecogenomic.org/ 新版安装 # 最新版 conda create -n gtdbtk-2.3.2 -c conda-forge -c bioconda gtdbtk=2.3.2 ...
Github: https://github.com/Ecogenomics/GTDBTk GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。
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Here is the original information from https://github.com/Ecogenomics/GTDBTk GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. It is designed to work with recent advances that allow hundreds ...
Last commit message Last commit date Latest commit Cannot retrieve latest commit at this time. History 964 Commits .github docs gtdbtk scripts tests .gitignore CODE_OF_CONDUCT.md CONTRIBUTING.md Dockerfile LICENSE README.md setup.py GTDB-Tk ...