12Branches46Tags Code Folders and files Name Last commit message Last commit date Latest commit pchaumeil Update de_novo_wf.rst Dec 3, 2024 38223c1·Dec 3, 2024 History 962 Commits .github refactor(config): Refactored config to read variables dependent on GT… ...
GTDB-Tk:https://github.com/ecogenomics/gtdbtk Bioconda:https://ecogenomics.github.io/GTDBTk/installing/bioconda.html 官网:https://gtdb.ecogenomic.org/ 新版安装 # 最新版 conda create -n gtdbtk-2.3.2 -c conda-forge -c bioconda gtdbtk=2.3.2 conda activate gtdbtk-2.3.2 # 配置数据库 conda e...
GPL-3.0 license GTDB-Tk Modified by the author (jansuechao@gamil.com) according to bugs and suggestions from the original GitHub website. The pplacer memory issue is solved by specify a specific cpu values for pplacer to use (https://github.com/Ecogenomics/GTDBTk/commit/520fbbd516bc6a28282...
Github: https://github.com/Ecogenomics/GTDBTk GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。 本...
Availability: GTDB-Tk is implemented in Python and licensed under the GNU General Public License v3.0. Source code and documentation are available at: https://github.com/ecogenomics/gtdbtk. Supplementary information: Supplementary data are available at Bioinformatics online. 展开 ...
Source code and documentation are available at: https://github.com/ecogenomics/gtdbtk.Contact: p.chaumeil@uq.edu.au or donovan.parks@gmail.comSupplementary information: Supplementary data are available at Bioinformatics online.1 IntroductionIt has recently become possible to obtain thousands of draft ...
Github: https://github.com/Ecogenomics/GTDBTk GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。
Change processing of GTDB directory input parameter so it's processed as a value rather than a queue channel. Fixes #641 PR checklist This comment contains a description of changes (with reason)...
Please post questions and issues related to GTDB-Tk on the Issues section of the GitHub repository. Questions related to the GTDB can be posted on the GTDB Forum or sent to the GTDB team. 🚀 Getting started Be sure to check the hardware requirements, then choose your preferred method: Bio...