Introduction GTDB(Genome Taxonomy Database)是一个专注于基因组分类学的数据库,旨在提供高质量的细菌、古细菌、叶绿体和线粒体的分类信息...
(2019). GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database. Bioinformatics 36, 1925-1927, doi: /10.1093/bioinformatics/btz848 120个基因单拷贝分类法;Donovan H. Parks, Maria Chuvochina, David W. Waite, Christian Rinke, Adam Skarshewski, Pierre-Alain Chaumeil & Philip ...
# 配置数据库 conda env config vars set GTDBTK_DATA_PATH="/hwfsxx1/ST_HN/P18Z10200N0423/huty/databases/GTDB_214.1/release214/" # 检测 gtdbtk check_install [2023-08-3116:01:13]INFO:GTDB-Tkv2.3.2[2023-08-3116:01:13]INFO:gtdbtk check_install[2023-08-3116:01:13]INFO:UsingGTDB-Tkrefer...
GTDB：基因组分类数据库，物种注释和进化树构建工具GTDB-tk
The GTDB Toolkit (GTDB-Tk) provides objective taxonomic assignments for bacterial and archaeal genomes based on the Genome Taxonomy Database (GTDB). GTDB-Tk is computationally efficient and able to classify thousands of draft genomes in parallel. Here we demonstrate the accuracy of the GTDB-Tk tax...
内容提示: Genome analysisGTDB-Tk: a toolkit to classify genomes with theGenome Taxonomy DatabasePierre-Alain Chaumeil*, Aaron J. Mussig , Philip Hugenholtz andDonovan H. Parks*Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia,...
Chaumeil PA, et al. 2019.GTDB-Tk: A toolkit to classify genomes with the Genome Taxonomy Database.Bioinformatics, btz848. The Genome Taxonomy Database (GTDB) is described in: Parks, D.H., et al. (2021).GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically...
Chaumeil PA, et al. 2019.GTDB-Tk: A toolkit to classify genomes with the Genome Taxonomy Database.Bioinformatics, btz848. The Genome Taxonomy Database (GTDB) is described in: Parks DH, et al. 2019.Selection of representative genomes for 24,706 bacterial and archaeal species clusters provide...
基因组分类数据库:GENOME TAXONOMY DATABASE 网址:https://gtdb./ 该数据库已经于2018/2020连续发表两篇Nature Biotechnology,软件于2019发表于Bioinformatcs,即可为细菌分类提供参考数据库,同时提供了物种分类、进化树构建的全套工具,绝对是服务到家的好工具。