gtdbtk check_install [2024-05-2014:10:37]INFO:GTDB-Tkv2.3.2[2024-05-2014:10:37]INFO:gtdbtk check_install[2024-05-2014:10:37]INFO:UsingGTDB-Tkreference data version r214:/data/home/jianglab/share/GTDB_r214/release214/[2024-05-2014:10:37]INFO:Runninginstall verification[2024-05-2014:1...
gtdbtk check_install [2023-08-3116:01:13]INFO:GTDB-Tkv2.3.2[2023-08-3116:01:13]INFO:gtdbtk check_install[2023-08-3116:01:13]INFO:UsingGTDB-Tkreference data version r214:/hwfsxx1/ST_HN/P18Z10200N0423/huty/databases/GTDB_214.1/release214[2023-08-3116:01:13]INFO:Runninginstall verificat...
GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。 本次测试版本为 GTDB-Tk v1.3.0,于2020年7月17...
GTDB：基因组分类数据库，物种注释和进化树构建工具GTDB-tk
GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。
GTDB-Tk is described in: Chaumeil PA, et al. 2022.GTDB-Tk v2: memory friendly classification with the Genome Taxonomy Database.Bioinformatics, btac672. Chaumeil PA, et al. 2019.GTDB-Tk: A toolkit to classify genomes with the Genome Taxonomy Database.Bioinformatics, btz848. ...
export_msa -> Export the untrimmed archaeal or bacterial MSA file 导出未剪裁的细菌/古菌多序列对齐文件 remove_labels -> Remove labels (bootstrap values, node labels) from an Newick tree 从Newick树中移除标签 convert_to_itol -> Convert a GTDB-Tk Newick tree to an iTOL tree 从Newick树中移除...
内容提示: Genome analysisGTDB-Tk: a toolkit to classify genomes with theGenome Taxonomy DatabasePierre-Alain Chaumeil*, Aaron J. Mussig , Philip Hugenholtz andDonovan H. Parks*Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia,...
The GTDB Toolkit (GTDB-Tk) provides objective taxonomic assignments for bacterial and archaeal genomes based on the Genome Taxonomy Database (GTDB). GTDB-Tk is computationally efficient and able to classify thousands of draft genomes in parallel. Here we demonstrate the accuracy of the GTDB-Tk tax...
GTDB-Tk v1.0.2 has been released (we recommend all users update to this version) Fixed an issue where FastANI threads would timeout withFastANI returned a non-zero exit code. Versions affected: 1.0.0, and 1.0.1. Note (Dec 5, 2019): ...