GTDB-Tk is described in: Chaumeil PA, et al. 2022.GTDB-Tk v2: memory friendly classification with the Genome Taxonomy Database.Bioinformatics, btac672. Chaumeil PA, et al. 2019.GTDB-Tk: A toolkit to classify genomes with the Genome Taxonomy Database.Bioinformatics, btz848. ...
GTDB-Tk v1.3.0 was released on July 17, 2020 along with new reference data for GTDB R05-RS95. Upgrading is recommended.GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. It is designed ...
Ecogenomics/GTDBTk: GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (github.com) https://github.com/Ecogenomics/GTDBTk GTDB- tk是一个基于基因组数据库分类法GTDB的软件工具包,用于分配细菌和古细菌基因组的客观分类分类。它的设计目的是利用最近的进展,...
Ecogenomics/GTDBTk: GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (github.com) https://github.com/Ecogenomics/GTDBTk GTDB- tk是一个基于基因组数据库分类法GTDB的软件工具包,用于分配细菌和古细菌基因组的客观分类分类。它的设计目的是利用最近的进展,...
https://gtdb.ecogenomic.org/ Vue 2 1 11 0 Updated Jan 30, 2025 gtdb-itol-decorate Public Creates iTOL files for tree decoration, given a set of GTDB genomes. Python 4 GPL-3.0 0 2 0 Updated Jan 17, 2025 gtdb-release-tk Public Toolkit for updating the GTDB to the next rele...
The GTDB-Tk uses FastANI to estimate the ANI between genomes. We recommend you have FastANI >= 1.2 as this version introduces a fix that makes the results deterministic. A query genome is only classified as belonging to the same species as a reference genome if the ANI between the genomes...
3.组装分析,包括组装、基因预测/去冗余和定量、功能基因注释和Kraken2基因物种注释。4.分箱挖掘单菌基因组,包括MetaWRAP混合样本分箱、dRep去冗余种/株基因组集、CoverM基因组定量、GTDB-tk物种注释和进化树 Figure 1. EasyMetagenome Pipeline from raw data to taxonomic & functional table for analyzing ...
Code Issues Pull requests GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. bioinformatics nomenclature taxonomy metagenomics phylogenetics bacteria archaea species-assignments Updated Mar 5, 2025 Python benjjneb / dada2 Star 487 Code Issues Pull ...
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. - Ecogenomics/GTDBTk