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GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. - Ecogenomics/GTDBTk
参考文献:Learning representations of microbe–metabolite interactions Ecogenomics/GTDBTk: GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (github.com) https://github.com/Ecogenomics/GTDBTk GTDB- tk是一个基于基因组数据库分类法GTDB的软件工具包,用于分...
参考文献:Learning representations of microbe–metabolite interactions Ecogenomics/GTDBTk: GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (github.com) https://github.com/Ecogenomics/GTDBTk GTDB- tk是一个基于基因组数据库分类法GTDB的软件工具包,用于分...
124 - wget https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_data.tar.gz 125 - wget https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_data.tar.gz (or, mirror) 124 + wget https://data.gtdb.ecogenomic.org/releases/latest/auxillary...
Ecogenomics / GTDBTk Star 503 Code Issues Pull requests GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. bioinformatics nomenclature taxonomy metagenomics phylogenetics bacteria archaea species-assignments Updated Mar 5, 2025 Python cmkobel / Compar...
Ecogenomics / GTDBTk Star 489 Code Issues Pull requests GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. bioinformatics nomenclature taxonomy metagenomics phylogenetics bacteria archaea species-assignments Updated Dec 2, 2024 Python tseemann / snipp...
GTDBTk Public GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. Python 504 GPL-3.0 84 24 0 Updated Mar 5, 2025 gtdb.ecogenomic.org Public https://gtdb.ecogenomic.org/ Vue 2 1 11 0 Updated Jan 30, 2025 gtdb-itol-decorate Public...
GTDB-Tk requires an environmental variable named GTDBTK_DATA_PATH to be set to the directory containing the data downloaded from https://data.ace.uq.edu.au/public/gtdbtk/.export GTDBTK_DATA_PATH=/path/to/release/package/ Alternatively, you can permanently add this variable to your .bash_...