Please post questions and issues related to GTDB-Tk on the Issues section of the GitHub repository. Questions related to theGTDBcan be posted on theGTDB Forumor sent to theGTDB team. 🚀 Getting started Be sure to check thehardware requirements, then choose your preferred method: ...
# GTDB-Tk v2.3.2 requires pydantic 1.x (see https://github.com/Ecogenomics/GTDBTk/pull/530) ('1.10.13;', ['GTDB-Tk-2.3.2-']), ('1.10.13;', ['GTDB-Tk-2.3.2-', 'GTDB-Tk-2.4.0-']), ], # medaka 1.1.*, 1.2.*, 1.4.* requires Pysam 0.16.0.1, # which is newer...
Here is the original information from https://github.com/Ecogenomics/GTDBTk GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB. It is designed to work with recent advances that allow hundreds ...
source bin/activate conda create -n GTDB source bin/activate GTDB conda install -c bioconda gtdbtk #conda默认下的是1.0.2,我换成了2.3.2 (python3 -m pip install pydantic==1.9.2) git clone https://github.com/Ecogenomics/GTDBTk.git cd GTDBTk-master python3 setup.py install --user python3...
Github: https://github.com/Ecogenomics/GTDBTk GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。 本...
内容提示: Genome analysisGTDB-Tk: a toolkit to classify genomes with theGenome Taxonomy DatabasePierre-Alain Chaumeil*, Aaron J. Mussig , Philip Hugenholtz andDonovan H. Parks*Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia,...
GTDB-Tk:https://github.com/ecogenomics/gtdbtk Bioconda:https://ecogenomics.github.io/GTDBTk/installing/bioconda.html 官网:https://gtdb.ecogenomic.org/ 新版安装 # 最新版 conda create -n gtdbtk-2.3.2 -c conda-forge -c bioconda gtdbtk=2.3.2 ...
Github: https://github.com/Ecogenomics/GTDBTk GTDB-Tk是一个软件工具包,用于根据基因组数据库分类法GTDB为细菌和古细菌基因组分配客观的分类法。它旨在与最近的进展一起使用,从而可以直接对环境样本中获得数百或数千个由基因组组装的基因组(MAG)进行物种分类注释。它也可以用于分离和单细胞的基因组物种注释。