统计 TCGA下载工具GDC Data Transfer Tool在Linux服务器的下载安装以及使用 1.下载:wget https://gdc.cancer.gov/files/public/file/gdc-client_v1.6.1_Ubuntu_x64.zip 2.解压: unzip -n gdc-client_v1.6.1_Ubuntu_x64.zip 3.验证是否成功: ./gdc-client --help4. ./gdc-client download -m [manifes...
首先，访问GDC Data Transfer Tool官网（cancer.gov）下载Linux版的GDC Data Transfer Tool。推荐下载最新版本，即gdc-client_v1.6.1_Ubuntu_x64，日期为2023年9月26日。在Linux服务器的终端中，输入以下命令以下载压缩包：如果下载速度慢，考虑在Windows系统上使用魔法工具下载该压缩包，然后通过winscp...
一、GDC Data Transfer Tool下载 GDC Data Transfer Tool是TCGA官方基于python开发的下载程序,在TCGA官网GDC部分可以找...
GDC Data Transfer Tool (gdc-client) Overview of the GDC Data Transfer Tool The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS. GDC Data Transfer Tool (gdc-client) Building the gdc-client Instructions Executing unit tests Instal...
Describes how to download RNA-Seq controlled data from GTEx via sra-toolkit and from TCGA via GDC Data Transfer Tool - KarakulakTulay/gtex-tcga-data-download
我们要下载的是其中的gdc-client_v1.6.1_Ubuntu_x64版本,这是2023年9月26日时GDC Data Transfer Tool的最新版本 打开linux shell,输入以下指令下载压缩包 wget https://gdc.cancer.gov/files/public/file/gdc-client_v1.6.1_Ubuntu_x64.zip 下载速度如果过于缓慢可以尝试在Windows下使用魔法工具下载该压缩包,随...
首先下载GDC Data Transfer Tool: 如上图所示,只选择一条数据进行演示 进入cart,然后找到GDC Data Transfer Tool.点击进入以下页面 找到我们需要的版本,进行下载即可。 下载数据库资料 我们先到CART中找到我们需要的下载的文件,下载manifest。 接着我们开始使用命令行下载,如图所示,点击运行,然后输入cmd,进入DOS状态,使...
In the special case of executing portal_client on an EC2 instance on Amazon AWS, it's faster and more economical to retrieve data from S3, since there are no egress charges applied to such transfer. Therefore, the portal_client is configured to automatically detect when it is invoked on Am...
Overview of the GDC Data Transfer Tool The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS. Building the gdc-client There is a bash script inside the ./bin directory of this repository namedpackagethat does most of the heavy lif...