I have downloaded SRR files (using prefetch). It says on the ncbi website that all of my runs have 2 reads per spot, but when I for example run SRR8743324 with: ./bin/fastq-dump --split-files SRR8743324, I only get one single fastq outpu...
NCBI SRA生成paired end fastq文件0 赞同 · 0 评论文章
usage: fasterq_dump [-h] [-f FILE] [-k] [-t] [-w] [-m] [-u {all,curl,wget,prefetch}] [--log] [accessions [accessions ...]] A program to run fastq-dump sequentially on a list of accession numbers. Will automatically detect if reads are single- or paired-end and will run...
which will result in a corresponding set of paired FASTQ files: -rw-r--r-- 1 glarue glarue 17M Jul 4 13:53 SRR3359557_1.fastq -rw-r--r-- 1 glarue glarue 17M Jul 4 13:53 SRR3359557_2.fastq -rw-r--r-- 1 glarue glarue 5.1M Jul 4 13:53 SRR3359558_1.fastq -rw-r--...