使用XP-CLR检测基因组中的选择信号 检测基因组选择信号的方法有很多种,其中 XP-CLR 方法是常用的一种。XP-CLR 是陈华老师、Nick Patterson 和 David Reich 在 2010 年发表的方法,全称叫 the cross-population composite likelihood ratio test(跨群体复合似然比检验),是一种是基于选择扫荡(selective sweeep)的似然...
使用xpclr分析出现TypeError: ufunc 'true_divide' not supported for the input types'我按照组学大讲堂...
map file as per XPCLR specs --popA POPA filepath to population A genotypes --popB POPB filepath to population A genotypes --chr CHROM, -C CHROM Which contig analysis is based on --ld LDCUTOFF, -L LDCUTOFF LD cutoff to apply for weighting --phased, -P whether data is phased for ...
上一篇文章《使用XP-CLR检测基因组中的选择信号》介绍了 XP-CLR。XP-CLR 是一种是基于选择扫荡(selective sweeep)的似然方法。选择扫荡可以增加群体之间的遗传分化,导致等位基因频率偏离中性条件下的预期值。XP-CLR 利用了两个群体之间的多基因座等位基因频率差异(multilocus allele frequency differentiation)建立模型,...
2023-04-11 03:59:58 : INFO : Done dropping above SNPs from analysis. XP-CLR algorithm starting. 2023-04-11 03:59:58 : INFO : No genetic distance provided; using rrate of 1e-08/bp 2023-04-11 04:00:13 : INFO : Omega estimated as : 1.218393 ...
LAF-002DevEUIs sharing the same DevAddrLafPacketAnalysis.pyInfoTwo different devices might have been assigned the same DevAddr. This isn't a security threat.If the device is over the air activated (OTAA): Check logic used to assign DevAddrs, and make sure that the server doesn't assign th...
map file as per XPCLR specs --popA POPA filepath to population A genotypes --popB POPB filepath to population A genotypes --chr CHROM, -C CHROM Which contig analysis is based on --ld LDCUTOFF, -L LDCUTOFF LD cutoff to apply for weighting --phased, -P whether data is phased for ...