Whole-genome sequencingPurpose: Toxoplasma gondii is an intracellular parasite that can affect all vertebrae and is the causative agent of toxoplasmosis. At present, the United States CDC (Centers for Disease Control and Prevention) recognizes this infection as a neglected disease. Toxoplasma gondii ...
CDC: Centers for Disease Control and Prevention CG: Complete Genomics CNV: Copy number variation DEL: Deletion DUP: Duplication ENCODE: ENCyclopedia Of DNA Elements ERDS: Estimation by Read Depth with SNVs GWAS: Genome-wide association study IBD: Identity-by-descent MAF: Minor allele...
We would like to thank the many collaborators in the GenomeTrakr network, CDC PulseNet, USDA-FSIS, Florida Department of Health, and the Florida Department of Agriculture and Consumer Services who provide their data for broad use and applications, and the data support that we all receive at ...
limitations remain in discovery of lipid-associated alleles using whole genome sequencing (WGS), partly due to limited sample sizes, ancestral diversity, and interpretation of clinical significance. Among 66,329 ancestrally diverse (56% non-European...
b, WGR involves whole-genome sequencing (WGS) of prospective parents and single-nucleotide polymorphism (SNP) microarray genotyping of sibling embryos (Methods and Supplemental Note 1). Allele measurements at each SNP are color-coded based on the parental haplotype of origin illustrated in a. A ...
SPECIAL ARTICLE ©American College of Medical Genetics and Genomics Improving the efficiency and relevance of evidence-based recommendations in the era of whole-genome sequencing: an EGAPP methods update David L. Veenstra, PharmD, PhD1, Margaret Piper, PhD, MPH2, James E. Haddow, MD3, ...
Throughout the study period, the infection prevention measures at study sites were consistent with US CDC and WHO guidelines11,12. Specific infection prevention measures included surveillance cultures for asymptomatic carriers identified via screening of high-risk patients and epidemiologically-linked ...
We next performed whole-genome sequencing (WGS) analyses of in vitro and in vivo post-WGD samples. The data showed that the number of acquired mutations in 6-weeks post-WGD RPETP53−/−cells was about 1.8-times higher than in control cells kept in culture for the same amount of time...
CDC Biotechnology Core Facility. Libraries were analyzed for size and concentration, pooled and denatured for loading onto flowcells for cluster generation. Sequencing was performed on an Illumina HiSeq2500 platform using HiSeq Rapid SBS 250 × 250 cycle paired-end sequencing kits. Each library...
Sequencing Consortium (ICGSC http://ceg.icrisat.org/gt-bt/ICGGC/ICGSC.htm), and as result of global research partnership co-led by ICRISAT, UC-Davis, and BGI-Shenzhen, involving 49 scientists from 23 organizations in 10 countries the draft genome of kabuli genotype CDC Frontier was ...