GWAS across all analyzable phenotypes and diverse ancestry groups in the UK Biobank. A full description of how these summary statistics were generated and how to work with them can be found here:http://pan.ukbb.broadinstitute.org/. Code overview ...
600 GWAS were performed in this project based on UK Biobank release 2 data under application ID 16406. Full summary statistics can be downloaded from the original source following the provided links.https://ctg.cncr.nl/documents/p1651/ukb2_sumstats.tar.gz UKBBphenotype数据处理流程:https://git...
Analyses conducting GWAS across the UKBB diverse superpopulations - ukbb_pan_ancestry/opentargets/annotate_loci_with_otg.py at master · atgu/ukbb_pan_ancestry
Protein QTL summary stats are stored on bc4 here: /mnt/storage/private/mrcieu/data/UKB-PPP/.Perform MR - cis, trans, steiger filtered etc. This uses pQTLs for 1500 proteins and then extracts outcome data from OpenGWAS. Does the MR and saves along with PRS results etc in a single R...