emtoolsis a Python package with utilities for manipulating CryoEM images and metadata such as STAR files or SQLITE databases. It also contains other miscellaneous utils for processes handling and monitoring, among others. The library is composed by several modules that provide mainly classes to perfo...
To aid cryo-EM researchers, we developed a graphical user interface (GUI) tool that evaluates experimental orientation distributions. The GUI returns plots of projection directions, sampling constrained to the surface of a sphere, the SCF value, the fraction of the empty region of Fourier space, ...
Software tools for molecular microscopy There are a large number of software tools or software applications that have been specifically developed for the field sometimes referred to as molecular microscopy or cryo-electron microscopy or cryoEM. Several special issues of the Journal of Structural Biology...
NanoSoft's newly developed AutoGrid Rings & C-clips are a premium quality, less variable, functionally-equivalent option for clipping grids for use in Thermo Fisher Scientific (TFS) Cryo-Electron Microscopes and autoloader systems. These AutoGrid Rings & C-clips are cross-compatible with those fro...
New tools for the analysis and validation of Cryo-EM maps and atomic models Recent advances in the field of electron cryo-microscopy (cryo-EM) have resulted in a rapidly increasing number of atomic models of bio-macromolecules solved using this technique and deposited in the Protein Data Bank ...
Cryo-EM: beyond the microscope Curr Opin Struct Biol, 46 (2017), pp. 71-78 Google Scholar 82 M. Hegazy, E. Cohen-Barak, J.L. Koetsier, N.A. Najor, C. Arvanitis, E. Sprecher, K.J. Green, L.M. Godsel Proximity ligation assay for detecting protein-protein interactions and protein...
New tools for automated high-resolution cryo-EM structure determination in RELION-3 et al. New tools for automated high-resolution cryo-EM structure determination in RELION-3. Elife 7, (2018)... J Zivanov,T Nakane,Bjrn O Forsberg,... - 《Elife Sciences》 被引量: ...
for cryo tissue, was adapted to the FFPE tissue workflow by the inclusion of three pairs of probes for each target mRNA. The assay measures mRNA transcriptome wide and can be refined by the spike-in of custom probes. Since FFPE samples are the gold standard for tissue preservation for ...
The ROME (Refinement and Optimization via Machine lEarning for cryo-EM) software package is a parallel computing software system dedicated for high-resolution cryo-EM structure determination and data analysis, which implements advanced machine learning a
emtools is a Python package with utilities for manipulating CryoEM images and metadata such as STAR files or SQLITE databases. It also contains other miscellaneous utils for processes handling and monitoring, among others. The library is composed by several modules that provide mainly classes to per...