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A key challenge of modern biology is to uncover the functional role of the protein entities that compose cellular proteomes. To this end, the availability of reliable three-dimensional atomic models of proteins is often crucial. This protocol presents a
The vast majority of the chores in the living cell involve protein-protein interactions. Providing details of protein interactions at the residue level and... N Tuncbag,A Gursoy,O Keskin - 《Physical Biology》 被引量: 85发表: 2011年 Template-Based Protein Structure Modeling Functional characteriza...
RaptorX server: A Resource for Template-Based Protein Structure Modeling Assigning functional properties to a newly discovered protein is a key challenge in modern biology. To this end, computational modeling of the three-dimens... Morten Kllberg,G Margaryan,W Sheng,... - 《Methods in Molecular...
A new approach to the prediction of protein structures that uses distance and backbone virtual-bond dihedral angle restraints derived from template-based models and simulations with the united residue (UNRES) force field is proposed. The approach combines the accuracy and reliability of template-based...
The recent growth of the number of experimentally-determined protein structures in Protein Data Banks (PDB) has provided hundreds of thousands of structural templates to support reliable template-based protein structure modeling. In this paper, taking advantage of large-scale data processing platforms, ...
Most computational protein structure prediction methods are designed for either templatebased or template-free (ab initio) structure prediction. The approaches that integrate the prediction capabilities of both template-based modeling and template-free modeling are needed to synergisticallycombine the two kin...
Although many advanced and sophisticatedab initioapproaches for modeling protein–protein complexes have been proposed in past decades, template-based modeling (TBM) remains the most accurate and widely used approach, given a reliable template is available. However, there are many different ways to exp...
Template-based structure modeling of protein-protein interactions. The structure of protein–protein complexes can be constructed by using the known structure of other protein complexes as a template. The complex structure... A Szilagyi,Y Zhang - 《Current Opinion in Structural Biology》 被引量: 70...