git clone https://github.com/mpertea/stringtie2 cd stringtie2 make release Note that simply runningmakewill produce an executable which is more suitable for debugging and runtime checking but which can be significantly slower than the optimized version which is obtained by usingmake release. ...
Commits on May 20, 2019 switched master to v2 files gperteacommittedMay 21, 2019 075f214 Commits on May 2, 2019 version bump just for the terrible gff sorting bug affecting merge.. (ugh) gperteacommittedMay 2, 2019 15c51ff fixed refseq sorting bug afecting --merge, introduced by...
StringTie2 is implemented in C++ and is freely available as open-source software under the MIT license athttps://github.com/gpertea/stringtie[46]. Ten of the short-read RNA-seq datasets used in this study were also used by Shao and Kingsford in their evaluation of Scallop [11] and can ...
(下面为我的问题和github上的一个类似问题。 stringtie 和DEseq2间prepDE.py脚本报错怎么解决?7 关注 · 3 回答问题 我发现之前版本的stringtie输出,在同一annotation file下输出的gtf文件内容行数是一样的,而新版本则不是。 旧版本两个文件的行数 相同样本新版本 可以看出相同样本相同命令行新版本输出比旧版本...
rnaseq_tutorial/stringtie_expression_matrix.pl at master · griffithlab/rnaseq_tutorial · GitHub# 提取TPM $ ./stringtie_expression_matrix.pl --expression_metric=TPM --result_dirs='test1_rep1,test1_rep2,test2_rep1,test2_rep2' --transcript_matrix_file=transcript_tpms_all_samples.tsv --...
Sign up for freeto join this conversation on GitHub. Already have an account?Sign in to comment bernt-matthiasbernt-matthias approved these changes nsoranzoAwaiting requested review from nsoranzonsoranzo is a code owner
MemberAuthor Sign up for freeto join this conversation on GitHub. Already have an account?Sign in to comment Assignees No one assigned Labels None yet Projects None yet Milestone No milestone Development No branches or pull requests 5 participants...
In order to build StringTie from this GitHub repository the following steps can be taken: git clone https://github.com/mpertea/stringtie2 cd stringtie2 make release Note that simply running make will produce an executable which is more suitable for debugging and runtime checking but which can...