maxulysse deleted the stringtie_stringtie branch July 22, 2024 17:53 Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment Reviewers LouisLeNezet drpatelh priyanka-surana Assignees No one assigned Labels None yet Projects None yet Milestone ...
git clone https://github.com/gpertea/stringtie cd stringtie make -j4 release During the first run of the above make command a few library dependencies will be downloaded and compiled, but any subsequent stringtie updates (usinggit pull) should rebuild much faster. ...
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git clone https://github.com/gpertea/stringtie cd stringtie make release If the compilation is successful, the resulting stringtie binary can then be copied to a programs directory of choice. Installation of StringTie this way should take less than a minute on a regular Linux or Apple MacOS ...
git clone https://github.com/mpertea/stringtie2 cd stringtie2 make release Note that simply runningmakewill produce an executable which is more suitable for debugging and runtime checking but which can be significantly slower than the optimized version which is obtained by usingmake release. ...
Requires short-read FASTQ file(s) to assemble and HISAT2 and GMAP indexes of the same reference genome Example: ./create_sr_rna.py -1 pair1.fq -2 pair2.fq -H hisat2_ref -G gmap_ref -o out_dir/ Final super-read + short read alignments can be found in out_dir/sr_merge.bam ...
stringtie github https://github.com/andreaminio/AnnotationPipeline-EVM_based-DClab/blob/master/Pipeline/022_RNAseq_assembly.md https://github.com/gpertea/gffread 一、安装 cd~/biosoft gitclonehttps://github.com/gpertea/stringtiecdstringtie
git clone https://github.com/gpertea/stringtie cd stringtie make -j4 release During the first run of the above make command a few library dependencies will be downloaded and compiled, but any subsequent stringtie updates (using git pull) should rebuild much faster. To complete the installation...