In order to build StringTie from this GitHub repository the following steps can be taken: git clone https://github.com/mpertea/stringtie2 cd stringtie2 make release Note that simply running make will produce an executable which is more suitable for debugging and runtime checking but which can...
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git clone https://github.com/gpertea/stringtie cd stringtie make -j4 release During the first run of the above make command a few library dependencies will be downloaded and compiled, but any subsequent stringtie updates (using git pull) should rebuild much faster. To complete the installation...
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git clone https://github.com/gpertea/stringtie cd stringtie make release If the compilation is successful, the resulting stringtie binary can then be copied to a programs directory of choice. Installation of StringTie this way should take less than a minute on a regular Linux or Apple MacOS ...
git clone https://github.com/mpertea/stringtie2 cd stringtie2 make release Note that simply runningmakewill produce an executable which is more suitable for debugging and runtime checking but which can be significantly slower than the optimized version which is obtained by usingmake release. ...
stringtie github https://github.com/andreaminio/AnnotationPipeline-EVM_based-DClab/blob/master/Pipeline/022_RNAseq_assembly.md https://github.com/gpertea/gffread 一、安装 cd~/biosoft gitclonehttps://github.com/gpertea/stringtiecdstringtie
Requires short-read FASTQ file(s) to assemble and HISAT2 and GMAP indexes of the same reference genome Example: ./create_sr_rna.py -1 pair1.fq -2 pair2.fq -H hisat2_ref -G gmap_ref -o out_dir/ Final super-read + short read alignments can be found in out_dir/sr_merge.bam ...
git clone https://github.com/gpertea/stringtie cd stringtie make -j4 release During the first run of the above make command a few library dependencies will be downloaded and compiled, but any subsequent stringtie updates (using git pull) should rebuild much faster. To complete the installation...