fa2fq:从FASTA文件中提取FASTQ文本。 fx2tab:将FASTQ/FASTA文件转换为表格格式,包含GC含量和质量等信息。 genautocomplete:生成shell自动完成脚本(bash、zsh、fish、powershell)。 grep:通过ID、名称、序列或motif搜索序列,允许不匹配。 head:提取前n条序列。 head-genome:打印第一个基因组的序列,名称中有共同的前缀。
duplicate:复制n次序列 fa2fq:从fa文件中检索fq文本 fx2tab:将fq/fa文件转换为表格模式,包含GC含量,质量等 genautocomplete:生成shell自动完成脚本(bash|zsh|fish|powershell) grep:通过ID/name/sequence/sequence/motif搜索序列,允许不匹配 head:提取前n条序列 head-genome:打印第一个基因组的序列,名称中有共同的...
# 单样本处理A1_1.fq.gz，过滤保留平均质量分数≥25的序列 seqkit seq -Q 25 A1_1.fq.gz -o A...
convert convert FASTQ quality encoding between Sanger, Solexa and Illumina fa2fq retrieve corresponding FASTQ records by a FASTA file fq2fa convert FASTQ to FASTA fx2tab convert FASTA/Q to tabular format (and length, GC content, average quality...) tab2fx convert tabular format to FASTA/Q form...
new command seqkit fa2fq: retrieving corresponding FASTQ records by a FASTA file seqkit split2: new flag -e/--extension for forcing compresson or changing compression format. #276 support changing output prefix via -o/--out-file. #275 seqkit concat: fix handling of multiple seqs with the...
fa2fqRetrieve corresponding FASTQ records by a FASTA fileFASTA/Q+ only tab2fxConvert tabular format to FASTA/Q formatTSV convertConvert FASTQ quality encoding between Sanger, Solexa and IlluminaFASTA/Q SearchinggrepSearch sequences by ID/name/sequence/sequence motifs, mismatch allowedFASTA/Q+ and -...
and Illumina fa2fq retrieve corresponding FASTQ records by a FASTA file fq2fa convert ...
1. seqkit 查看fa.gz和fq.gz序列文件 seqkit可自动识别文件扩展名，而无需使用zcat查看.gz文件。seqkit...
Example Usage # get simple statistics from FASTA/Q files seqkit stats <file name(s)> # or with flags seqkit stats --all --tabular <file name(s)> # conversion from FASTA to FASTQ seqkit fa2fq <file name(s)>
Projects1 Security Insights Additional navigation options Files master .github benchmark doc seqkit tests .gitignore .travis.yml CHANGELOG.md Dockerfile LICENSE README-v0.3.1.1.md README.md go.mod go.sum seqkit2.jpg Breadcrumbs seqkit /