DBsnp is the largest database of human SNPs and having a pointer to the respective database entries simplifies working with the variants a lot. In our case, an identifier was available for about 97% of the detected variants.SummaryWith this we conclude our analysis of the WGS data you can...
Target gene prediction was performed using the TargetScan (version 6.2) database We also used miRTarBase (version 4.3), to identify targets that have been experimentally validated miR-Deep2 and miReap predict exact precursor sequence according from mature sequence 文章提到了fastq数据质量控制标准,数据比...
进一步，对3组样本在克隆型多样性、V/J基因使用特征、CDR3长度分布、CDR3区氨基酸组成及理化性质等方面进行了比较分析。此外，本研究还基于相关结果构建了脑胶质瘤免疫组库数据库(http://www.oncoimmunobank.cn/glicrdb/database/homepage)图2. 不同组别的TCR克隆型chao1富集指数比较 案例2：基于RNA-seq数据发现...
AnnotationHub 是访问基因组数据或查询大量全基因组资源的绝佳资源,包括 ENSEMBL、UCSC、ENCODE、Broad Institute、KEGG、NIH Pathway Interaction Database 等。所有这些信息都已存储并可通过直接连接轻松访问数据库。 要开始使用 AnnotationHub,我们首先加载库并连接到数据库: 代码语言:javascript 代码运行次数:0 运行 AI代...
database example man vignettes .Rbuildignore .gitattributes DESCRIPTION NAMESPACE README.html README.md scMLnet_0.1.0.tar.gz README scMLnet Introduction scMLnet is an R package developed to construct inter-/intracellular multilayer singaling network based on single-cell RNA-seq expression data. sc...
An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object. - dosorio/rPanglaoDB
Here, we introduce rPanglaoDB, an R package to download and merge the uniformly processed and annotated scRNA-seq data provided by the PanglaoDB database. To show the potential of rPanglaoDB for collecting rare cell types by integrating multiple public datasets, we present a biological application...
方面积累了丰富的经验,包括单细胞数据的补齐(iScience 2021:102393,入选“细胞出版社2021中国年度论文”)、批次效应消除及分类(BIB 2022: bbab570),以及空间转录组数据生成(BIB 2022: bbac297)等,目前依托中国广州国家超级计算中心正在构建...
翟继先课题组此次发布的数据库(Plant Public RNA-seq Database, PPRD)整合了来自GEO、SRA、ENA和DDBJ数据库中几乎所有的玉米(19,664)、水稻(11,726)、大豆(4,085)、小麦(5,816)和棉花(3,483)的RNA-seq文库资源。该工作对所有的文库信息进行整理和分类,得到大量的突变体、处理条件以及不同组织和生长发育时期...
AnnotationHub 是访问基因组数据或查询大量全基因组资源的绝佳资源,包括 ENSEMBL、UCSC、ENCODE、Broad Institute、KEGG、NIH Pathway Interaction Database 等。所有这些信息都已存储并可通过直接连接轻松访问数据库。 要开始使用 AnnotationHub,我们首先加载库并连接到数据库: # Load libraries library(AnnotationHub) library...