Search gene expression levels from 44,000+ public plant RNA-Seq libraries and 28,000+ Arabidopsis RNA-seq libraries Arabidopsis (28,164libraries) Maize (19,664libraries) Rice (11,726libraries) Soybean (4,085libraries) Wheat (5,816libraries) ...
2004), and Plant Public RNA-seq Database (Yu et al. 2022). Other databases contain data from large initiatives like the 1KP (1000 Plants), where transcriptomes of 1124 species were sequenced to infer the phylogenomic relationships (Matasci et al. 2014; Leebens-Mack et al. 2019). Another...
这需要较少数量的微阵列或RNA seq 库(使用1385个微阵列样本,CoNekT使用913个RNA序列样本),ARS可以通过简单的“Google-like”搜索从20000多个拟南芥RNA seq-101文库中快速提取任意基因的丰度信息,并对组织102特异性、发育阶段、胁迫相关以及突变体和103种治疗方法的差异表达进行多重可视化。
Moroidins are plant ribosomally-synthesized and posttranslationally-modified peptides with anticancer activity. Here, the authors generate a searchable database of publicly available plant RNAseq data and identify a moroidin analog with higher cytotoxic activity. ...
RNA-Seq, Transcriptomics, Gene-expression, Visualisation, Database, Agriculture, Barley, Maize, Rice, Wheat, TomatoBackground: The genome-wide expression profile of genes in different tissues/cell types and developmental stages is a vital component of many functional genomic studies. Transcriptome data...
Plant J.|大豆公开发表的1298份RNA-seq数据再挖掘 近日,The Plant Journal杂志在线发表了巴西北弗卢米嫩塞州立大学Thiago M。 Venancio团队的题为Systematic analysis of 1298 RNA‐Seq samples and construction of a comprehensive soybean (Glycine max) expression atlas的资源类文章(Resource)。收集了1298份公共...
2023年5月13日,华中农业大学曹扬荣教授团队与东北农业大学陈庆山教授合作在The Plant Cell上在线发表了题为“GmNAC039 and GmNAC018 activate the expression of cysteine protease genes to promote soybean nodule senescence”的研究论文,该文章利用CUT&Tag技术联合RNA-seq,解析了大豆根瘤衰老的分子调控机制。该研究同...
最近有一篇小麦RNA-seq的文章发到plant cell上，也有一篇大麦转录组的文章发到plant journal上。当我看到文章的时候，第一时间发给了胖丫，兴奋的给胖丫说：“看看小麦转录组文章发到plant cell，plant journal了。”胖丫看我这么兴奋，一脸不屑的说道：“看你没见过世面的样子，当年我都见过小麦转录组发science呢，...
tion to these public data, we obtained ncRNAs rom pub- lished literature that had not been included in the PMRD database although some are reported as important actors in pivotal biological processes. When comparing data cov- erage o PNRD to other similar plat orms, such as RNA- central (...
Current RNA-seq evidence of mRNA mobility is largely due to noise in the data A substantial number of messenger RNAs (mRNAs) annotated as graft-mobile on the basis of RNA sequencing (RNA-seq) data lack statistical support. Known technical issues, such as RNA sequencing noise, mapping errors,...