RNA-Seq differential expression analysis: An extended review and a software tool RNA-Seq差异表达分析: 扩展评论和软件工具 正确鉴定特定条件之间的差异表达基因(DEG)是理解表型变异的关键。高通量转录组测序(RNA-Seq)已成为这些研究的主要选择。 因此,用于RNA-Seq数据的差异表达分析的方法和软件的数量也迅速增加。
CNKI南京航空航天大学学报(英文版)ZHANG L, LIU X J. A comprehensive review on RNA-seq data analysis[J]. Transactions of Nanjing University of Aeronautics and Astronautics, 2016, 33(3): 339-361.
single cell RNA-seq 提高了基因表达研究的分辨率,这项技术也带来越来越多的单细胞分析方法。这使得研究者难以驾驭这一多工具格局并从中搭建最新的工作流程来分析自己的数据。在这里,我们详细介绍了典型的单细胞 RNA-seq 数据分析步骤,包括预处理(质量控制、标准化、数据校正、特征选择和降维)以及细胞及基因水平的下游...
Li W V , Li J J . Modeling and analysis of RNA-seq data: a review from a statistical perspective[J]. Quantitative Biology, 2018, 6(3):195-209. Pertea M , Kim D , Pertea G M , et al. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown...
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis https://www.biostars.org/p/273537/What the FPKM? A review of RNA-Seq expression units http://www.rna-seqblog.com/rpkm-fpkm-and-tpm-clearly-explained/...
The polychaete Boccardia wellingtonensis is a poecilogonous species that produces different larval types. Females may lay Type I capsules, in which only planktotrophic larvae are present, or Type III capsules that contain planktotrophic and adelphophagic
Cellular and Molecular Life Sciences REVIEW RNA-seq: from technology to biology 来自 Citeseer 喜欢 0 阅读量: 46 作者:S Marguerat,J Bähler,T Genome,S Marguerat,J Bähler 收藏 引用 批量引用 报错 分享 全部来源 免费下载 求助全文 Citeseer zjubiolab.zju.edu.cn (全网免费下载) scolaris.beta....
Finally, RNA-seq can be coupled with different types of biochemical assay to analyze many other aspects of RNA biology, such as RNA–protein binding, RNA structure, or RNA–RNA interactions. These applications are, however, beyond the scope of this review as we focus on ‘typical’ RNA-seq...
这次是分享李婧翌团队的一篇综述《Modeling and analysis of RNA-seq data: a review from a statistical perspective》,从统计学的角度理解RNA-seq的分析 分析的方向 目前正对RNA-seq的数据主流的有4个方向(当然事实上不止这些,可以辛苦读者慢慢收集整理,欢迎与我讨论) ...
RNA-seq必看综述: A survey of best practices for RNA-seq data analysis Estimating number of transcripts from RNA-Seq measurements (and why I believe in paywall) What the FPKM? A review of RNA-Seq expression units 畅享全文阅读体验 扫码后在手机中选择通过第三方浏览器下载...