Error in .plot_cnv_references(infercnv_obj = infercnv_obj, ref_data = ref_data_t,: Error Calls: <Anonymous> -> plot_cnv -> .plot_cnv_references 5: (function () traceback(2))() 4: stop("Error") 3: .plot_cnv_references(infercnv_obj = infercnv_obj, ref_data = ref_data_t, re...
Hello, First of all thank you for putting together such a helpful package! I encounter the following error in the plot_cnv() Step: Error in seq.default(x.range[1], x.range[2], length.out = nb_breaks) : 'from' must be a finite number Can ...
Plot the CNV Regions with the Density Plot
usage: scripts/cnv_dumbbell_plot.r [-h] -c CNV_DATA -g GENE_SYMBOL [-H HEIGHT] [-W WIDTH] [-o OUTDIR] [-p PREFIX] CNV_Dumbbell_plot:https://www.omicsclass.com/article/1572 optional arguments: -h, --help show this help message and exit -c CNV_DATA, --cnv_data CNV_DATA inp...
("plot_out/inferCNV_output2"):'plot_out\inferCNV_output2'already exists>start_time<-Sys.time()>infercnv_obj2=infercnv::run(infercnv_obj,+cutoff=1,+out_dir='plot_out/inferCNV_output2',+cluster_by_groups=F,# cluster+hclust_method="ward.D2",+plot_steps=F,+denoise=F,+HMM=F)INFO[...
(A)Deletions and (B)Duplications.Manhattan Plot of SNP based CNV Statistics. (A)Deletions and (B)Duplications.Joseph T. GlessnerAlbert Vernon SmithSaarene PanossianCecilia E. KimNagahide TakahashiKelly A. ThomasFengxiang WangKallyn Seidler
Scatterplot showing all 99 samples matched for FCGR3B CNV with PRT-REDVR, Sequenom and qPCR. 来自 figshare.com 喜欢 0 阅读量: 17 作者:US Haridan,U Mokhtar,LR Machado,ATA Aziz,RH Shueb,M Zaid,B Sim,M Mustafa,NKN Yusof,CKC Lee ...
Methods: Illumina SNP microarray data from 13,254 individuals were analyzed with scatterplots and by PennCNV. The data were analyzed without the prior exclusion of low-quality samples. For CNV scatterplot visualization, the median signal intensity of all SNPs located within a CNV region was ...
Plot the XHMM CNV spanning the input target indices.BASEOUTPUTNAME
Manhattan plot for the FBAT-CNV P-values.Manuela ZandaSuna OnengutGumuscuNeil WalkerCorina ShtirDaniel GalloChris WallaceDeborah SmythJohn A. ToddMatthew E. HurlesVincent Plagnol