Old versions of Seurat, from Seurat v2.0.1 and up, are hosted in CRAN’s archive. To install an old version of Seurat, run: # Enter commands in R (or R studio, if installed)# Install the remotes packageinstall.packages('remotes')# Replace '2.3.0' with your desired versionremotes::i...
因为不同的书放在不同的商城,所以我们要从不同的地方来采购。...# install.packages('pacman') library(pacman) p_info(Seurat) Package: Seurat Version: 4.0.0 Date: 2021...RANN" "RColorBrewer" "Rcpp" "RcppAnnoy" "reticulate" "rlang" [34] "ROCR...
library(Seurat) sceList <- lapply(unique(samples),function(folder){ print(folder) Crea...
* removing ‘/home/R/x86_64-pc-linux-gnu-library/4.0/Seurat’ Warning in install.packages : installation of package ‘Seurat’ had non-zero exit status Does anyone have an idea how to solve this? This is my sessionInfo: R version 4.0.0 (2020-04-24) Platform: x86_64-pc-linux-gnu (...
?Package LibPath Version Priority Depends Imports LinkingTo Suggests Enhances License Licens... image.png 安装方式不对
Stacked violin plot functionality is added toSeuratin version 3.2.1. library(Seurat) library(ggplot2)# Load Seurat objpbmc<- readRDS("data/pbmc_2k_v3_Seurat.rds")features<- c("CD79A","MS4A1","CD8A","CD8B","LYZ","LGALS3","S100A8","GNLY","NKG7","KLRB1","FCGR3A","FCER1A","CS...
In the meantime, this issue has been resolved on the develop branch of Seurat. To install the development version of Seurat, please see the instructions here. Thanks! Dev version fixed this for me. Out of curiosity, what is the go-to recommendation here? I see two solutions (as of today...
更新packageVersion("CellChat")‘1.1.3’ Seurat_Satija关注IP属地: 辽宁 0.2752021.08.28 23:31:26字数0阅读773 > library(CellChat) Error in library(CellChat) : 不存在叫‘CellChat’这个名字的程辑包 > devtools::install_github("sqjin/CellChat") Downloading GitHub repo sqjin/CellChat@HEAD These ...
一百万细胞或更多细胞的单细胞转录组分析在数据整合方面非常消耗电脑内存,我在单位32G 内存的iMac上跑,经常会出现R session abortion。然后发现Seurat官方给出了v5,即更新版的。 根据官网的说明,一步步安装,在安装到BPCells这个package的时候,开始出问题,前后折腾了差不多快5天。现在这里做一个分享: ...
For nucleotide conversion RNA-seq data with single cell resolution12,14, grandR interfaces with the Seurat package25 and can integrate the metabolic labeling information by different means as described previously5. grandR provides tools for visualizations of individual genes and summaries of a data se...