ERROR: compilation failed for package ‘SeuratObject’ * removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/SeuratObject’ Warning in install.packages : installation of package ‘SeuratObject’ had non-zero exit status ERROR: dependency ‘SeuratObject’ is not available for packag...
intersect, saveRDS Loading Seurat v5 beta version To maintain compatibility with previous workflows, new Seurat objects will use the previous object structure by default To use new Seurat v5 assays: Please run: options(Seurat.object.assay.version = 'v5') [1] ‘4.9.9.9050’ remotes::install_gith...
Old versions of Seurat, from Seurat v2.0.1 and up, are hosted in CRAN’s archive. To install an old version of Seurat, run: # Enter commands in R (or R studio, if installed)# Install the remotes packageinstall.packages('remotes')# Replace '2.3.0' with your desired versionremotes::i...
我对R非常陌生,主要是用Seurat软件包来评估我的单细胞RNAseq数据。今天,我想更新R版本和RStudio。之后,我在使用已安装的软件包时遇到了问题。这是我的问题:Installing package into ‘C:/Users/benne/AppData/Local/R/win-library 浏览27提问于2022-10-25得票数 0 4回答 R包更新 、 我在访问R中一个软件...
2: In install.packages("Seurat") : installation of package ‘igraph’ had non-zero exit status 3: In install.packages("Seurat") : installation of package ‘leiden’ had non-zero exit status 4: In install.packages("Seurat") : installation of package ‘SeuratObject’ had non-zero exit stat...
'getOption("repos")'replaces Bioconductor standard repositories,see'?repositories'fordetails replacement repositories:CRAN:https://cloud.r-project.org Bioconductor version3.14(BiocManager1.30.16),R4.1.1(2021-08-10)Installingpackage(s)'HDCytoData'also installing the dependencies'Biostrings','KEGGREST',...
Seurat_Satija关注IP属地: 香港 0.1512021.07.05 11:02:50字数 0阅读 2,154 (scvelo)root02:56:36~$ pip install numba==0.5.0Collectingnumba==0.5.0Downloadingnumba-0.5.0.tar.gz(333kB)|###|333kB21.6MB/s ERROR:Commanderroredoutwith exit status1:command:/home/rstudio/miniconda3/envs/scvelo/...
I ran into this error when using remote to install Seurat-Wrappers. I wish if anyone would help me with this problem. Thanks a lot. Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no packa...
Hi , Concerning the last new feature in Seurat “UMAP”, I have a question: I directly tried to run Umap with alignment data but I got an error (“Could not find function “RunUmap”). I used the commands below to install and run UMAP: .libPa...
R version 4.1.1 (2021-08-10) -- "Kick Things" Platform: x86_64-w64-mingw32/x64 (64-bit) I tried installing pacakge SeuratDisk with install.packages in R version 4.1.1, but installation failed saying package ‘SeuratDisk’ is not available ...