HTG(High Throughput Genome Sequence):高通量测序产生的短片段DNA序列,用于构建基因组序列的起始框架。 GSS(Genome Survey Sequence):用于对基因组进行测序覆盖的随即DNA片段。 TSA(Transcriptome Shotgun Assembly):通过组合和拼接EST片段得到的转录组整体序列。 WGS(Whole Genome Shotgun Sequence):全基因组无序序列,...
有没有人知道在NCBI数据库中检索到的Salmonellasp. S122-66464 NODE_22_length_42387_cov_155.148, whole genome shotgun sequence代表什么意思?比如length_42387代表核苷酸序列长度为42387 bp,那Salmonellasp. S122-66464代表什么呢?求大神
BLAST searches of the NCBI whole genome shotgun sequence database identify complement factor H-like sequences in lower primatesAlternative pathwayComplementHumanFactor HThe complement system is an essential component of the innate immune system that participates in elimination of pathogens and altered ...
4、Database of Genomic Structural Variations (dbVar):genomic structural variation data, such as large insertions, deletions, translocations etc. 5、Database of Expressed Sequence Tags (dbEST) 6、Transcriptome Shotgun Assembly Sequence Database (TSA):transcriptome assemblies 7、Whole Genome Shotgun Submi...
提交的是草图,属于Whole Genome Shotgun (WGS),如果是完成图就是 non-WGS。因为是草图,所以所有的序列没有拼成一条,所以才会有很多contig或者scarfold。至于总数量和拼接的以及测序的好坏有关。scarfold是用contig拼起来。 数据在几个MB左右,所以选择用HTTP在线传就可以。
Database of GenBank+EMBL+DDBJ sequences from STS Divisions . STS数据库 chromosome A database with complete genomes and chromosomes from the NCBI Reference Sequence project.. NCBI参考序列计划中所有的完整基因组和染色体序列 wgs A database for whole genome shotgun sequence entries. 基因组鸟枪法测序得...
wholegenomeshotgunsequence NC3IReferenceS&qu@nce: NC_007077.2 UA卜悟DtllCS linear assembly LOCTJ5!fC_Q07977LES3:号DpDWA DEFINI11JfT^ApismelliferalinlcaqeCQC.TBxence—***imal4.0) z wriolegfenomaghotgpinsecjzense B CON10-KAI-ZD1Q(tased ...
本文关于如何在NCBI的FTP里下载需要的基因组数据。 已知信息 例如:我从文献里看到作者测了Escherichia coliATCC 25922的基因组,想从NCBI下载。 原文提供的信息是: This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/ GenBank under the accession number ASHD00000000. The version described in th...
Intermediate genomic assemblies of BAC and/or Whole Genome Shotgun sequence data。 NW_123456 NW_123456789 Genomic Automated Intermediate genomic assemblies of BAC or Whole Genome Shotgun sequence data。 NZ_ABCD12345678 Genomic Automated A collection of whole genome shotgun sequence data for a project...
geneidhurefbestrefseqhgncgnomongenome LOCUSNW_0018385635879bpDNAlinearCON 10-JUN-2009 DEFINITIONHomosapienschromosome1genomiccontig,alternateassembly (based onHuRef),wholegenomeshotgunsequence.(简要说明) ACCESSIONNW_001838563 VERSIONNW_001838563.2GI:157811749 ) DBLINKProject:20837 KEYWORDSWGS.(???) SOURCEHomo...