新冠病毒(SARS-CoV-2)基因组序列是由一系列特定的DNA或RNA碱基所组成，这些碱基编码了病毒的各种蛋白质...
SARS-CoV-2codon usagesecondary structurebioinformaticsVAITA consistent area of interest since the beginning of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has been the sequence composition of the virus and how it has changed over time. Many resources have been ...
genome:下载一个基因组的组装注释数据 taxonomy:根据进化分类下载数据,例如taxon human,sars-cov-2 virus: 下载病毒相关的数据 场景1:下载基因组数据 基因组文件下载 在大多数的生信分析的准备工作里都有要下载基因组这一步,以前都是打开网页不断地查询之后复制链接地址然后下载,现在直接一行命令就可以完成了。 在gen...
genome:下载一个基因组的组装注释数据 taxonomy:根据进化分类下载数据,例如taxon human,sars-cov-2 virus: 下载病毒相关的数据 场景1:下载基因组数据 基因组文件下载 在大多数的生信分析的准备工作里都有要下载基因组这一步,以前都是打开网页不断地查询之后复制链接地址然后下载,现在直接一行命令就可以完成了。 在gen...
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from th...
# lineage提取SARS-COV-2的世系 $ echo "2697049" \ | taxonkit lineage -t -R \ | sed "s/\t/\n/g" 2697049 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Cornidovirineae;Coronaviridae;Orthocoronavirinae;Betacoronavirus;Sarbecovirus;Severe acute respiratory syndrome-rela...
The script takes care of the different ways to format the virus names (for example, hCov-19 for GISAID, SARS-CoV-2 for NCBI), translates the different ways to specify the country, checks the date format and adds sequence IDs where needed. It does not support more than the date and isol...
# lineage提取SARS-COV-2的世系 $ echo "2697049" \ | taxonkit lineage -t -R \ | sed "s/\t/\n/g" 2697049 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Cornidovirineae;Coronaviridae;Orthocoronavirinae;Betacoronavirus;Sarbecovirus;Severe acute respiratory syndrome-rela...
datasets download virus genome taxon sars-cov-2 --host dog datasets download virus protein S --host dog --filename SARS2-spike-dog.zip datasets download --input-json request_file.json --filename output.zip Available Commands gene download a gene dataset ...
为了确保遗传变异评估的一致性和准确性,NCBI开发了一套分析流程(ncbi.nlm.nih.gov/sra/do),旨在系统地识别存储在序列读取档案(SRA)和GenBank仓库中的超过1480万个SARS-CoV-2序列样本中的核苷酸和蛋白质变化。 作为NCBI病毒资源的一部分,SARS-CoV-2变异概览仪表板(ncbi.nlm.nih.gov/activ)利用了来自NCBI SARS-Co...