Proteins: Structure, Function, and BioinformaticsI. Jonassen, I. Eidhammer, and W. R. Taylor. Discovery of local pack- ing motifs in protein structures. Proteins: Structure, Function, and Bioinformatics, 34(2):206-219, 1999.I. Jonassen, I. Eidhammer, and W. R. Taylor. Discovery of ...
The importance of short structural motifs in protein structure analysis. J Comput Aided Mol Des 1993;7:457- 472.R. Unger, J.L. Sussman, The importance of short structural motifs in protein structure analysis, J. Comp. Aided Mol. Des. 7 (1993) 457-472....
structure predictionStructures of proteins and protein–protein complexes are determined by the same physical principles and thus share a number of similarities. At the same time, there could be differences because in order to function, proteins interact with other molecules, undergo conformations ...
Protein folds and domains, structural motifs and connectivity between secondary structure elements, helices and sheets
Folds and secondary structure of lassos Let us discuss now the secondary structures and protein folds that appear in lassos, by considering two main classifications from CATH: Class and Architecture20. Class describes secondary content of proteins, which can be classified asmainly α, mainly β, α...
Segmenting Motifs in Protein-Protein Interface Surfaces Protein-protein interactions form the basis for many intercellular events. In this paper we develop a tool for understanding the structure of these interactions. Specifically, we define a method for i JM Phillips,J Rudolph,PK Agarwal - Springer...
By applying the Delaunay tessellation to a 3D structure of a protein, we can assign each local structure to a unique code that is defined so as to reflect its structural feature. Since a structural motif is defined as a set of the local structures in this paper, the structural motif is ...
in the⍺-carboxysome lineage, a disordered and highly repetitive protein named csos2 is essential for carboxysome formation and function. without it, the bacteria require high co 2 to grow. how does a protein predicted to be lacking structure serve as the architectural scaffold for such a ...
This indicates that the recurrent structural motifs, as we define them, describe recurrent structural patterns that are important for protein stability. In view of their properties, such structural motifs are potentially useful for inter-residue contact prediction and protein structure refinement. 展开 ...
1 Detecting Correct Structure of Protein Fragments in a Database of Motifs Szymon Nowakowski, 1 Jerzy Tiuryn 2 Keywords: structural motifs, mixture of PSSMs, mixture of Dirichlets, dependency 1 Introduction. Fragment-based methods of protein structure prediction require identification of a local...